Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq803 170 3e-37 seq6640 167 3e-36 seq3619 152 8e-32 seq79 152 8e-32 seq7035 93.3 6e-14 >seq803 Length=10940 Score = 170 bits (188), Expect = 3e-37 Identities = 401/590 (68%), Gaps = 24/590 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||||||||| |||||||| ||||| ||||||| || Sbjct 1728 CTGTTCCCCATCCGCTACCAGCGCATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTC 1787 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||||||| || | ||| || | | |||| ||| | || Sbjct 1788 TGGACCGCCGAGGAGGTCGATTTGAGCGCCGACATGAAGCACTGGGCT--TCGCTCAAC- 1844 Query 125115 GAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 ||| || ||||| || || |||| | |||||||||| |||| | |||||| Sbjct 1845 --AAC-GA-CGAGAAGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCCGCCAGCGATGG 1900 Query 125171 AATCGTCAACGACAATCTGT-TGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 |||||| ||| || ||| || | || ||| | || || | || |||| | Sbjct 1901 CATCGTCGCCGAGAACCTGGCTGGC-CGCTTCATGAAGGAAGTGCAGGTGCCCGAGGCGC 1959 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 ||||| ||||| ||||| ||| || |||||| | ||||||||||||||||| | Sbjct 1960 GCTGCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAATGTACTCGCTCC 2019 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGAC 125348 | || |||| ||| || |||||| | || || || ||||| || || || Sbjct 2020 TCATCGACACCTACGTTAAAGATCCG-ATCGAGAAGGACCACCTCTTCCGGGCCATGGAG 2078 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT---CGATGACGAC 125405 || ||||| || | || ||||| | |||| || || ||||| | | || | Sbjct 2079 ACTGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGCTGGATTTGCAAGGAGGGT 2138 Query 125406 AAGTCTT--CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-T 125462 ||| | | | |||| | || | | |||||||| || |||||||||||||| | Sbjct 2139 --GTCGAGACCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCT 2196 Query 125463 TCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 ||| | || ||| ||||||| ||||||||||||||||| || |||||||| || | Sbjct 2197 CCGGCTCTTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCC 2255 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct 2256 TTCAGCAACGAGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2305 >seq6640 Length=3469 Score = 167 bits (184), Expect = 3e-36 Identities = 399/589 (68%), Gaps = 22/589 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| |||||| | || || ||||||||| |||||||| ||||| ||||||| || Sbjct 1722 CTGTTCCCCATCCGCTACCAGCGCATTTGGGAGATGTACAAGAAGGCCGAGGCCTCGTTC 1781 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||| ||||||||| || | ||| || | | |||| ||| | | Sbjct 1782 TGGACCGCCGAGGAGGTCGATTTGAGCGCCGACATGAAGCACTGGGCT--TCGCT---CA 1836 Query 125115 GAAACTGAGCGAGAG---TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | ||| || | || || || |||| | |||||||||| |||| | |||||| Sbjct 1837 GCAAC-GACGAAAAGCACTTCATCAAGCACGTGCTGGCCTTCTTCGCCGCCAGCGATGGT 1895 Query 125172 ATCGTCAACGACAATCTGT-TGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 |||||| ||| || ||| || | || ||| | || || | || |||| | Sbjct 1896 ATCGTCGCCGAGAACCTGGCTGGC-CGCTTCATGAAGGAAGTGCAGGTGCCCGAGGCGCG 1954 Query 125231 GTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 ||||| ||||| ||||| ||| || |||||| | ||||||||||||||||| || Sbjct 1955 CTGCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAAATGTACTCGCTCCT 2014 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACA 125349 || |||| ||| || |||||| | || || || ||||| || || || | Sbjct 2015 CATCGACACCTACGTTAAAGATCCG-ATCGAGAAGGACCACCTCTTCCGGGCCATGGAGA 2073 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGAT---CGATGACGACA 125406 | ||||| || | || ||||| | |||| || || ||||| | | || | Sbjct 2074 CTGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCCATGCGCTGGATTTGCAAGGAGGGT- 2132 Query 125407 AGTCTT--CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TT 125463 ||| | | | |||| | || | | |||||||| || |||||||||||||| | Sbjct 2133 -GTCGAGACCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTC 2191 Query 125464 CGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || ||| ||||||| ||||||||||||||||| || |||||||| || | Sbjct 2192 CGGCTCTTTCTGC-TCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCT 2250 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||| |||||| |||| || |||||||| || ||||| |||||||| Sbjct 2251 TCAGCAACGAGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2299 >seq3619 Length=11060 Score = 152 bits (168), Expect = 8e-32 Identities = 380/573 (66%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | | || || || || ||||| | | ||||| | || || | || Sbjct 7448 ACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCC-CG 7506 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| || || ||||| | ||| |||| | || || || Sbjct 7507 CTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGTG 7566 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||| | ||||||||| | ||| | || ||| ||| || ||| || Sbjct 7567 GCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCG 7626 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | || || | || ||| | || || | ||||||||||||||| | Sbjct 7627 CGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTC 7686 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 || ||| ||||| || | |||||| || | | ||||| |||| || | ||||| Sbjct 7687 TGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGGGG 7746 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--- 97162 | | |||||||||| ||||| | |||||||| |||||||| || | || Sbjct 7747 CAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCG---CGCCCGCCGGGT 7803 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | || | || || ||| || ||| | | | ||| | |||||||| || || Sbjct 7804 GGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 7863 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 ||||| ||||||||||| || || |||| ||||| | ||| ||||||| || Sbjct 7864 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 7923 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | || || || ||||||||||| | | ||||| |||| || ||||| ||| || Sbjct 7924 CCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 7983 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCCAAGTT 97375 ||| ||||| ||| || ||||||||||| Sbjct 7984 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGTT 8016 Score = 114 bits (126), Expect = 2e-20 Identities = 164/228 (72%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACAG 98095 |||||||||| || |||||| | || ||| || | ||||| ||||| |||||| | Sbjct 8688 TCTACAAGACGGTATGGGAGCTGCC--CCAGCGCGTCATCATCGACATGGCCGCCGACCG 8745 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--- 98152 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | Sbjct 8746 CTCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGC 8805 Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 || | | || ||||| ||||| ||||| ||| |||||||||||||||||||||||| Sbjct 8806 CAAGC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTA 8862 Query 98213 CTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||| ||| | || | ||||| |||| || || | || ||||| || Sbjct 8863 CTACCTGCGCACCCGGCCGGCCGCCAACGCGATCCAGTTCACGGTCGA 8910 >seq79 Length=69635 Score = 152 bits (168), Expect = 8e-32 Identities = 380/573 (66%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | | || || || || ||||| | | ||||| | || || | || Sbjct 65952 ACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCC-CG 66010 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||||||| || || ||||| | ||| ||||| | || || || Sbjct 66011 CTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGTG 66070 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||| | ||||||||| | ||| | || ||| ||| || ||| || Sbjct 66071 GCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCG 66130 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | || || | || ||| | || || | ||||||||||||||| | Sbjct 66131 CGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTC 66190 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 || ||| ||||| || | |||||| || | | ||||| |||| || | ||||| Sbjct 66191 TGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGGGG 66250 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--- 97162 | | |||||||||| ||||| | |||||||| |||||||| || | || Sbjct 66251 CAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCG---CGCCCGCCGGGT 66307 Query 97163 AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 ||| | || | || || ||| || ||| | | | ||| | |||||||| || || Sbjct 66308 GGTCAAGGCCCAGGAGCTTTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 66367 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 ||||| ||||||||||| || || |||| ||||| | ||| ||||||| || Sbjct 66368 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 66427 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | || || || ||||| ||||| | | ||||| |||| || ||||| ||| || Sbjct 66428 CCAGTCGTCGAACCTGTGTACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 66487 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCCAAGTT 97375 ||| ||||| ||| || ||||||||||| Sbjct 66488 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGTT 66520 Score = 109 bits (120), Expect = 8e-19 Identities = 163/228 (71%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC--TGATCGATATGGCTGCCGACAG 98095 ||||||| || || |||||| | || ||| || | ||||| ||||| |||||| | Sbjct 67192 TCTACAAAACGGTGTGGGAGCTGCC--CCAGCGCGTCATCATCGACATGGCCGCCGACCG 67249 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--- 98152 | |||||| |||||||| || ||| |||| | ||| | | ||||||| | | Sbjct 67250 CTCGGCCTACATCGACCAGAGCCAGTCGCTCAACGTCTACATGGGCGAGCCCTCGTTTGC 67309 Query 98153 CAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 || | | || ||||| ||||| ||||| ||| |||||||||||||||||||||||| Sbjct 67310 CAAGC---TCACCTCGATGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTA 67366 Query 98213 CTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 ||| ||| | || | ||||| |||| || || | || ||||| || Sbjct 67367 CTACCTGCGCACCCGGCCGGCCGCCAACGCGATCCAGTTCACGGTCGA 67414 >seq7035 Length=2989 Score = 93.3 bits (102), Expect = 6e-14 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCG-ACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 |||||||||| | |||||||| || | | | | | ||||| |||| |||||| | Sbjct 973 TCTACAAGACGGCATGGGAGATCTCGCAGCGTGTCA-TCATCGACCTGGCCGCCGACCGC 1031 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA---C 98153 | ||| || |||||||| || ||| |||| || ||| | || | ||||||| | Sbjct 1032 TCGGCCTATATCGACCAGAGCCAGTCGCTCAACCTCTACATGGCGGCTCCCACCTTTGCC 1091 Query 98154 AGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTAC 98213 | | | ||||| || ||||||||||| ||| ||||||||||||||| ||||||||| Sbjct 1092 ACGC---TCACTTCCATGCACTTTTACGCCTGGCGCAAGGGCCTCAAGACTGGCATGTAC 1148 Query 98214 TATCT 98218 || || Sbjct 1149 TACCT 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740959685012680