Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq3402 96.9 3e-15 seq1143 96.9 3e-15 >seq3402 Length=9736 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 99652 TAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCG 99711 ||||| || |||| |||||||||||| ||||||||||| || |||||| |||||| Sbjct 6730 TAGATCTTGCGGAGTGAGGGCGGGATCGGTACGCCGCGGTTGACAGAGAAGGCAAGGCCG 6789 Query 99712 TGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| || || | | || ||||||||| ||||||||||| || || || || Sbjct 6790 TGGGCTTGACCCTCGTTGAAGTAGGGGTCTTGGCCCAGGATTACTACTTTCAC 6842 >seq1143 Length=29337 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 99652 TAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCG 99711 ||||| || |||| |||||||||||| ||||||||||| || |||||| |||||| Sbjct 7106 TAGATCTTGCGGAGTGAGGGCGGGATCGGTACGCCGCGGTTGACAGAGAAGGCAAGGCCG 7047 Query 99712 TGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||| || || | | || ||||||||| ||||||||||| || || || || Sbjct 7046 TGGGCTTGACCCTCGTTGAAGTAGGGGTCTTGGCCCAGGATTACTACTTTCAC 6994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440839992748680