Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1020 118 9e-22 seq358 113 4e-20 seq2145 111 1e-19 seq3696 104 2e-17 seq206 104 2e-17 seq95 95.1 1e-14 seq2555 84.2 2e-11 >seq1020 Length=19758 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || |||||||| || |||| || ||||||| Sbjct 16112 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTC 16053 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | |||||||| ||| || | || ||||||||| Sbjct 16052 GAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 15993 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| |||||||| | | | ||||| |||| ||||| ||||| || ||||| || Sbjct 15992 AATCTTCTGCTTCACGTTCTCAATGGTGTCGGACGACTCGACCTCGAGCGTAATGGTCTT 15933 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||||||||| ||||| || |||||||| || Sbjct 15932 GCCGGTGAGAGTCTTCACGAAGATCTGCATTGT 15900 >seq358 Length=114647 Score = 113 bits (124), Expect = 4e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| |||||||| || ||||||| |||||||| ||| || | Sbjct 5871 CTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 5930 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | ||||||||| || |||||||| | Sbjct 5931 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 5990 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| || | ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 5991 CTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCAC 6050 Query 48715 AAAAATCTGCATCGT 48729 || |||||||| || Sbjct 6051 GAAGATCTGCATTGT 6065 >seq2145 Length=7803 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| ||||| | || ||||||| |||||| Sbjct 2171 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGC 2112 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || ||| | | ||||||||| ||| ||| Sbjct 2111 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 2052 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | ||||| || | ||||| ||||| || ||||| || |||||| Sbjct 2051 TGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTG 1992 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| ||||| || |||||||| || Sbjct 1991 AGAGTCTTCACGAAGATCTGCATTGT 1966 >seq3696 Length=15212 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || ||||| || ||||||| |||||||| ||| || | Sbjct 10916 CTCCTTCTGAATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 10857 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | Sbjct 10856 GATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 10797 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| |||| ||||| ||||| || || || ||||| || || || || || Sbjct 10796 CTCAATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGAC 10737 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 10736 GAAGATCTGCAT 10725 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| ||||| | || ||||||| |||||||| ||| || | Sbjct 11372 CTCCTTCTGAATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 11313 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | ||||||||| || |||||||| | Sbjct 11312 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 11253 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || ||||| ||||| || || Sbjct 11252 CTCGATCGTGTCGCTCGACTCAACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGAC 11193 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 11192 GAAGATCTGCAT 11181 >seq206 Length=17459 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||| ||||||||||| ||||| | || ||||||| Sbjct 12407 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTC 12466 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | |||||||| ||| || | | ||||||||| Sbjct 12467 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 12526 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || |||||||||| | | | || |||||| | ||||| ||||| || || || || Sbjct 12527 GATCTTCTGCTTGACATTCTCAATAGTATCGCTGGACTCGACCTCGAGCGTGATCGTCTT 12586 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || || || |||||||| Sbjct 12587 TCCCGTAAGGGTCTTGACGAAGATCTGCAT 12616 >seq95 Length=142255 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || || | || ||||||| |||||||| ||| || | Sbjct 109118 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 109059 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| || ||| | | ||||||||| || |||||||| | Sbjct 109058 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 108999 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || ||| | ||||| ||||| || ||||| || ||||| ||||| || || Sbjct 108998 CTCGATCGTGTCGCTCGACTCAACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGAC 108939 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 108938 GAAGATCTGCAT 108927 >seq2555 Length=15026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || ||||||||||| | | || ||||||||||||| Sbjct 9842 ATGGAGGGTGGACTCCTTCTGCATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCCAGCTG 9783 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || |||||| || || ||| | | |||||||||| | Sbjct 9782 CTTGCCGGCAAAGATGAAACGCATTTGGTCGGGCGGAATGCCTTCCTTGTCCTGGAGGCG 9723 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||||||| | | | |||| || | ||| |||||| || ||||| || ||||| Sbjct 9722 CTGCTTGATGGTCTCGATGGAGTCTCCGGGGTCCATCTCGAGCGTGATGGTCTTGCCGGT 9663 Query 48703 GAGAGTTTTCACAAAAATCTG 48723 ||| || ||||| || ||||| Sbjct 9662 GAGGGTCTTCACGAAGATCTG 9642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421196045448743