Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1020 82.4 7e-11 seq358 82.4 7e-11 >seq1020 Length=19758 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || ||| || ||| ||||| Sbjct 16112 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTC 16053 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | | ||||| || || || ||||| || ||||| | Sbjct 16052 GAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 15993 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||| ||| | | ||||| | ||||| || | ||| ||||| || Sbjct 15992 AATCTTCTGCTTCACGTTCTCAATGGTGTCGGACGACTCGACCTCGAGCGTAATGGTCTT 15933 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| ||||||||||| Sbjct 15932 GCCGGTGAGAGTCTTCACGAAGATCTGCAT 15903 >seq358 Length=114647 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || ||| || ||| ||||| Sbjct 5625 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTC 5684 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | | ||||| || || || ||||| || ||||| | Sbjct 5685 GAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 5744 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| ||| ||||| | | ||||| || | ||| ||||| || Sbjct 5745 GATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTT 5804 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| Sbjct 5805 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 5834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231000095480