Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4484 159 5e-35 seq954 159 5e-35 seq3900 150 3e-32 seq21 150 3e-32 seq3394 143 4e-30 seq3 143 4e-30 >seq4484 Length=4228 Score = 159 bits (176), Expect = 5e-35 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 833 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 892 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 893 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTTTTC 952 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || ||| |||||||||||| | |||||||| Sbjct 953 CTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCTCGTAGGAAGACTGTT 1012 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || ||||||| ||||||| || | || | || ||||||| Sbjct 1013 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTA 1055 >seq954 Length=69270 Score = 159 bits (176), Expect = 5e-35 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 14955 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 15014 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 15015 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTTTTC 15074 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || ||| |||||||||||| | |||||||| Sbjct 15075 CTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCTCGCAGGAAGACTGTT 15134 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || ||||||| ||||||| || | || | || ||||||| Sbjct 15135 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTA 15177 >seq3900 Length=2537 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 1920 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 1979 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 1980 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGAGTGCTCAAGGTGTTC 2039 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || || ||| || ||||||||| | ||||||||| Sbjct 2040 CTCGAGAACGTTATCCGCGACGCCGTCACCTACACTGAGCACGCTCGCAGGAAGACTGTC 2099 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 2100 ACGGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 2140 >seq21 Length=98977 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 14398 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 14457 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 14458 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTC 14517 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || || ||| || ||||||||| | ||||||||| Sbjct 14518 CTCGAGAACGTTATCCGCGACGCCGTCACCTACACTGAGCACGCTCGCAGGAAGACTGTC 14577 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 14578 ACGGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 14618 >seq3394 Length=2705 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 1449 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 1390 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 1389 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTGTTC 1330 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || || ||||| | |||||||| Sbjct 1329 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAACACGCCCGCAGGAAGACTGTT 1270 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||||| | || ||||| || Sbjct 1269 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTACCCTCTACGGTTTCGG 1211 >seq3 Length=132153 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 8314 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 8255 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 8254 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTGTTC 8195 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || || ||||| | |||||||| Sbjct 8194 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAACACGCCCGCAGGAAGACTGTT 8135 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||||| | || ||||| || Sbjct 8134 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTACCCTCTACGGTTTCGG 8076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065377599899