Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3696 107 1e-18 seq10508 105 4e-18 seq2145 100 2e-16 seq5693 96.9 2e-15 seq1262 96.9 2e-15 seq1020 96.9 2e-15 seq95 96.9 2e-15 seq1939 91.5 1e-13 seq404 91.5 1e-13 seq971 87.8 1e-12 >seq3696 Length=15212 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || || ||| |||||| || || ||||| || | || || |||| || Sbjct 11162 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTC 11103 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || ||||| || || ||||| || || |||| |||| ||| || |||||| Sbjct 11102 GAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 11043 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAACTTCTAATGTAATAGTT 38285 || ||||||||||| |||| || || | ||| || ||||| || | |||||||| Sbjct 11042 GATCTTTTGCTTCACGTTCTCGATCGTGTCGCTCGAC--TCAACCTCGAGCGTAATAGTC 10985 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||||| || || ||||| |||||||| Sbjct 10984 TTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 10953 >seq10508 Length=2145 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1956 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 1897 Query 20007 G---GTAATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 1896 GCTTGCAATATTTAGCCTT 1878 >seq2145 Length=7803 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| |||||| || || ||||| || | ||| ||| |||| || | || Sbjct 2627 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGC 2568 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || || || | ||||| || || |||||| || || Sbjct 2567 TTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTC 2508 Query 38235 TGCTTCACATTCTGGACAGTATCT--CCACTTTCAACTTCTAATGTAATAGTTTTACCCG 38292 |||||||| |||| || || || | ||| | || || | ||||| || ||||||| Sbjct 2507 TGCTTCACGTTCTCGATCGTGTCGGACGACT--CGACCTCGAGCGTAATCGTCTTACCCG 2450 Query 38293 TCAAGGTTTTCACGAATATCTGCATG 38318 | | |||||||||||| ||||||||| Sbjct 2449 TAAGGGTTTTCACGAAGATCTGCATG 2424 >seq5693 Length=7660 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | || | || ||||| |||||| || || ||||| || | Sbjct 3248 TACCACCGCGCAGGCGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 3189 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || |||| || | || || || ||||| || ||||| || || || | || Sbjct 3188 CCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGG 3129 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTC 38266 ||| ||| || |||||| || ||||||||||| |||| || |||| ||| || || Sbjct 3128 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGAC--TC 3071 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | |||||||| || || |||| || || ||||| |||||||| Sbjct 3070 GACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3020 >seq1262 Length=10342 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | || ||| |||| || | || || ||||| || Sbjct 3105 TCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 3046 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||| || || || | ||||| ||| || |||||| || || |||||||| ||| Sbjct 3045 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 2986 Query 38247 TGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || || || || | |||||||| |||||||||||||| || || Sbjct 2985 TCGATGGTGTC-CGACGACTCGACCTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGAC 2927 Query 38306 GAATATCTGCAT 38317 ||| || ||||| Sbjct 2926 GAAGATTTGCAT 2915 >seq1020 Length=19758 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| | |||||| || || ||| |||||| || || ||||| |||| Sbjct 16585 CCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 16526 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || || || || || || ||||| || || || | |||| Sbjct 16525 AGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 16466 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTTCAA 38268 | ||| || |||||| || ||||||||||| |||| || || | ||| || || | Sbjct 16465 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATCGTGTCGCTCGAC--TCGA 16408 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| || ||||| |||||||| Sbjct 16407 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 16359 >seq95 Length=142255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || || ||| | |||| || || ||||| || | || || |||| || Sbjct 108908 CACCAAGTGGAGGGTGGAC-CCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTC 108850 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || ||||| || || ||||| || || |||| |||| ||| || |||||| Sbjct 108849 GAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 108790 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || ||||||||||| |||| || ||||| | ||||| || | |||||||| || Sbjct 108789 GATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAACCTCGAGCGTAATAGTCTT 108730 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||| || || ||||| |||||||| Sbjct 108729 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 108700 >seq1939 Length=16232 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| |||||| || || ||||| || | || || |||| || | || Sbjct 13264 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 13323 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || || || | ||||| ||| || |||||| || || Sbjct 13324 TTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 13383 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || || || || | ||||| || |||||||| Sbjct 13384 TGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATCGTCTTACCCGTA 13443 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | |||||||||||| |||||||| Sbjct 13444 AGGGTTTTCACGAAGATCTGCAT 13466 >seq404 Length=26703 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | || ||| |||| || | || || ||||| || Sbjct 18670 TCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 18611 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||| || || || | ||| | || || || ||| ||| || |||||||| ||| Sbjct 18610 ATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATCTTCTGCTTCACGTTC 18551 Query 38247 TGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || || || || | |||||||| |||||||||||||| || || Sbjct 18550 TCGATGGTGTC-CGACGACTCGACCTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGAC 18492 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 18491 GAAGATCTGCAT 18480 >seq971 Length=11586 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||| |||||| || || ||||| |||| | ||| |||| || | || Sbjct 8254 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGC 8195 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || || |||| |||| ||| || |||||| || ||| Sbjct 8194 TTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTT 8135 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| | |||||| | || || || | ||||| || || || ||| Sbjct 8134 TGCTTCACGTTCTCAATAGTATCGCTGGACTCGACCTCGAGCGTAATCGTCTTGCCAGTC 8075 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| |||||||| Sbjct 8074 AGCGTCTTGACGAAGATCTGCAT 8052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334903345258433