Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq8813 98.7 1e-15 seq5710 98.7 1e-15 seq634 98.7 1e-15 seq3338 96.9 4e-15 seq124 96.9 4e-15 seq4450 95.1 1e-14 seq594 95.1 1e-14 seq5638 93.3 5e-14 seq10 93.3 5e-14 >seq8813 Length=1380 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || |||||||| ||||| || ||||| || |||||||| | || ||||| ||| || Sbjct 341 TTCATCGGACCGACCTACTACCAGCGACTGAAGCACATGGTGGATGATAAGATCCACTCG 282 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || ||| || |||||| ||||| |||| | Sbjct 281 CGTGCGCGCGGCCCCGTGCAGATCCTCACCCGGCAGCCCGTAGAGGGTCGTTCGCGTGAT 222 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| |||||||| | |||||||| |||| Sbjct 221 GGTGGTCTTCGATTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCTGCCCAG 162 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 161 TTCCTCAAGGAGCG 148 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 15042 TGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCG 15101 |||| |||||| | || ||||||||||| | || | | || ||||||||| | Sbjct 1068 TGCGGACGCCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGACAGAAGGGCACGGTGG 1009 Query 15102 GCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTA 15161 |||| || | || ||| || ||||||||||| | | ||||| || |||||||| | Sbjct 1008 GCATCATGTACCGCCAAGAGGACATGCCCTTCAACATCGAGGGCATCACCCCCGACATCA 949 Query 15162 TCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||| || |||||| ||||| |||||||| Sbjct 948 TCGTCAACCCGCACGCCATCCCCTCCCGTATGACCAT 912 >seq5710 Length=4298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || |||||||| ||||| || ||||| || |||||||| | || ||||| ||| || Sbjct 4215 TTCATCGGACCGACCTACTACCAGCGACTGAAGCACATGGTGGATGATAAGATCCACTCG 4156 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || ||| || |||||| ||||| |||| | Sbjct 4155 CGTGCGCGCGGCCCCGTGCAGATCCTCACCCGGCAGCCCGTAGAGGGTCGTTCGCGTGAT 4096 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| |||||||| | |||||||| |||| Sbjct 4095 GGTGGTCTTCGATTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCTGCCCAG 4036 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 4035 TTCCTCAAGGAGCG 4022 >seq634 Length=29013 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || |||||||| ||||| || ||||| || |||||||| | || ||||| ||| || Sbjct 27893 TTCATCGGACCGACCTACTACCAGCGACTGAAGCACATGGTGGATGATAAGATCCACTCG 27952 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || ||| || |||||| ||||| |||| | Sbjct 27953 CGTGCGCGCGGCCCCGTGCAGATCCTCACCCGGCAGCCCGTAGAGGGTCGTTCGCGTGAT 28012 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| |||||||| | |||||||| |||| Sbjct 28013 GGTGGTCTTCGATTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCTGCCCAG 28072 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 28073 TTCCTCAAGGAGCG 28086 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 15042 TGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCG 15101 |||| |||||| | || ||||||||||| | || | | || ||||||||| | Sbjct 27195 TGCGGACGCCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGACAGAAGGGCACGGTGG 27254 Query 15102 GCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTA 15161 |||| || | || ||| || ||||||||||| | | ||||| || |||||||| | Sbjct 27255 GCATCATGTACCGCCAAGAGGACATGCCCTTCAACATCGAGGGCATCACCCCCGACATCA 27314 Query 15162 TCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||| || |||||| ||||| |||||||| Sbjct 27315 TCGTCAACCCGCACGCCATCCCCTCCCGTATGACCAT 27351 >seq3338 Length=16605 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/151 (76%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCA-CGTGCGGCATGA 15107 |||| |||||||||||||||| || | | ||| ||||||||| | || ||| | Sbjct 350 CCCGTGATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCA-GC 407 Query 15108 TTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 | | || ||||| |||||||||| | || ||| |||||| |||||||| | ||||||| Sbjct 408 TGTGGCCTCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCA 467 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||| || | ||||||| ||||||||||| Sbjct 468 ACCCGCACGCCTTCCCGTCGCGCATGACCAT 498 >seq124 Length=48725 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/151 (76%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCA-CGTGCGGCATGA 15107 |||| |||||||||||||||| || | | ||| ||||||||| | || ||| | Sbjct 1562 CCCGTGATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCA-GC 1619 Query 15108 TTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 | | || ||||| |||||||||| | || ||| |||||| |||||||| | ||||||| Sbjct 1620 TATGGCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCA 1679 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||| || | ||||||| ||||||||||| Sbjct 1680 ACCCGCACGCCTTCCCGTCGCGCATGACCAT 1710 >seq4450 Length=1350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126224 ACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGT 126283 |||| ||||||||||| ||| | || | | | |||| ||||||| ||| |||||| Sbjct 85 ACCGTGTGCCAAACTGGCCGGCGGGGAAGAGGAGCGGCACGTTGTTGGATCCGGCAAAGT 144 Query 126284 CCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCT 126343 ||| || | | ||| |||||| | || ||||||||| | |||| | |||| Sbjct 145 TCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCT 204 Query 126344 GCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||||||||||||||||| ||||||||| ||||| || Sbjct 205 GCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCAT 241 >seq594 Length=29688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126224 ACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGT 126283 |||| ||||||||||| ||| | || | | | |||| ||||||| ||| |||||| Sbjct 21094 ACCGTGTGCCAAACTGGCCGGCGGGGAAGAGGAGCGGCACGTTGTTGGATCCGGCAAAGT 21153 Query 126284 CCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCT 126343 ||| || | | ||| |||||| | || ||||||||| | |||| | |||| Sbjct 21154 TCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCT 21213 Query 126344 GCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||||||||||||||||| ||||||||| ||||| || Sbjct 21214 GCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCAT 21250 >seq5638 Length=5150 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 1375 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 1434 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | ||||| || ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 1435 CTCCGTCGAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 1492 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 1493 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 1551 Query 138074 GGTTGA 138079 |||||| Sbjct 1552 GGTTGA 1557 >seq10 Length=163601 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 102721 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 102780 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | ||||| || ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 102781 CTCCGTCGAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 102838 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 102839 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 102897 Query 138074 GGTTGA 138079 |||||| Sbjct 102898 GGTTGA 102903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611309897696800