Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq412 100 2e-16 >seq412 Length=117542 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || ||||| | ||||| |||| || |||||| Sbjct 114081 ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACGATCACGCTCGAGGTCGAGTCGAGC 114022 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 114021 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 113962 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||| || ||| ||| ||||| Sbjct 113961 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 113902 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 113901 ATCCAGAAGGAGTCGACTCTCCA 113879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271264229545