Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6640 122 2e-22 seq803 122 2e-22 seq4450 84.2 5e-11 seq594 84.2 5e-11 >seq6640 Length=3469 Score = 122 bits (134), Expect = 2e-22 Identities = 284/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||||||| ||| || | || || || || | || ||||| ||||||| || Sbjct 2148 GAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCC 2207 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || ||||||| || || | | |||||| | ||| Sbjct 2208 ATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATC 2267 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || ||||||||||| || ||| | || | | || | || | ||| ||| Sbjct 2268 AGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTACGGCATGCTGGTCAAC 2327 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| | ||| | ||| || ||| || || || || || | ||| ||||| Sbjct 2328 AAGCCCTCGACCGACGTGCCCAAGCAGATCGTCCTTGAGGCTGTCGAGATCGAGAAGGAG 2387 Query 243535 TTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGAC 243592 ||| | || |||| || || | ||||||||||||||| | | |||||| | | Sbjct 2388 TTCGTCACGGAATCGCTGC-CCGTGGCT-CTTATTGGCATGAACGCCAACCTCATGTGCC 2445 Query 243593 AGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACA 243652 |||||||||| ||||| |||||||| || || |||| || || | ||| || |||| Sbjct 2446 AGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCTCTCGGCTGTGACAAGCACTACA 2505 Query 243653 ACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCT 243712 |||| ||||| || | | |||||||| ||||||||| |||| || || ||||||| Sbjct 2506 ACTCATCCAACCCGTTCCCGTGGATGGAGCTTATTTCGCTTGAAGGCAAGACCAACTTCT 2565 Query 243713 TCGAA 243717 ||||| Sbjct 2566 TCGAA 2570 >seq803 Length=10940 Score = 122 bits (134), Expect = 2e-22 Identities = 284/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||||||| ||| || | || || || || | || ||||| ||||||| || Sbjct 2154 GAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCC 2213 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || ||||||| || || | | |||||| | ||| Sbjct 2214 ATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATC 2273 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || ||||||||||| || ||| | || | | || | || | ||| ||| Sbjct 2274 AGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTACGGCATGCTGGTCAAC 2333 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| | ||| | ||| || ||| || || || || || | ||| ||||| Sbjct 2334 AAGCCCTCGACCGACGTGCCCAAGCAGATCGTCCTTGAGGCTGTCGAGATCGAGAAGGAG 2393 Query 243535 TTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGAC 243592 ||| | || |||| || || | ||||||||||||||| | | |||||| | | Sbjct 2394 TTCGTCACGGAATCGCTGC-CCGTGGCT-CTTATTGGCATGAACGCCAACCTCATGTGCC 2451 Query 243593 AGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACA 243652 |||||||||| ||||| |||||||| || || |||| || || | ||| || |||| Sbjct 2452 AGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCTCTCGGCTGTGACAAGCACTACA 2511 Query 243653 ACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCT 243712 |||| ||||| || | | |||||||| ||||||||| |||| || || ||||||| Sbjct 2512 ACTCATCCAACCCGTTCCCGTGGATGGAGCTTATTTCGCTTGAAGGCAAGACCAACTTCT 2571 Query 243713 TCGAA 243717 ||||| Sbjct 2572 TCGAA 2576 >seq4450 Length=1350 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297520 GTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTC 297579 ||| ||| |||| || | | ||| || | || ||||||||| || || || || || Sbjct 125 GTTGTTGGATCCGGCAAAGTTCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTC 184 Query 297580 GCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 297639 ||| ||||| ||||| | ||||| || ||||| ||| | ||| || ||||||| || Sbjct 185 GCCGTGGTGGTAGGCCGTCTGCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCATCTC 244 Query 297640 GGTCGT-CAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAAC 297698 | ||| || || |||||||| | || | || || || || || |||| | Sbjct 245 GC-CGTGCAGCTTCCGCTTGAAGCACGCGTAAAGGACCTTGCGCTGGCCCGGCTTGAGGC 303 Query 297699 CATCAACGACCGACGGAATGCTTCG 297723 |||| ||||||||||||||||| || Sbjct 304 CATCGACGACCGACGGAATGCTGCG 328 >seq594 Length=29688 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297520 GTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTC 297579 ||| ||| |||| || | | ||| || | || ||||||||| || || || || || Sbjct 21134 GTTGTTGGATCCGGCAAAGTTCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTC 21193 Query 297580 GCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 297639 ||| ||||| ||||| | ||||| || ||||| ||| | ||| || ||||||| || Sbjct 21194 GCCGTGGTGGTAGGCCGTCTGCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCATCTC 21253 Query 297640 GGTCGT-CAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAAC 297698 | ||| || || |||||||| | || | || || || || || |||| | Sbjct 21254 GC-CGTGCAGCTTCCGCTTGAAGCACGCGTAAAGGACCTTGCGCTGGCCCGGCTTGAGGC 21312 Query 297699 CATCAACGACCGACGGAATGCTTCG 297723 |||| ||||||||||||||||| || Sbjct 21313 CATCGACGACCGACGGAATGCTGCG 21337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102728194427050