Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3619 161 2e-34 seq79 161 2e-34 seq7035 159 6e-34 seq803 136 6e-27 >seq3619 Length=11060 Score = 161 bits (178), Expect = 2e-34 Identities = 337/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || ||||||||||| || ||||| |||| |||| | | | ||| ||||||||||| ||| Sbjct 8910 TCGACCGTGAACTGGATCGCGTTGGCGGCCGGCCGGGTGCGCAGGTAGTACATGCCCGTC 8851 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 8850 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGGGCTC 8792 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || || || |||||||| Sbjct 8791 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGGTCGGCGGCCAT 8732 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTT 204080 | ||| ||| ||| | | |||||| ||||||||| | | | ||| || ||| | Sbjct 8731 GTCGATGATGACGCGCTGGGGCAGCTCCCATACCGTCTTGTAGAGCTTCT-TGATGTCGT 8673 Query 204081 GAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 ||| | || | | | | || || ||||||||||| | || | || | | Sbjct 8672 CAGGGATCTCGT-CGATGCGCTGGACCGAGCCGTTGTGCTGGACGAGCTTGTTCTTGAGC 8614 Query 204140 TCCTCCCCCCACATGC--CCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | | ||| | || | | ||| ||||| |||| |||||| ||||| || | Sbjct 8613 TGCGGGGACCAGAGGCCGCGCAGCTG--GAGCTCGCGCAACAGGTGCTCGTTGACGACCG 8556 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 ||||| |||| ||| | | || ||| | | |||| | ||| | || || || || Sbjct 8555 TGAAGTCGCCGGCCAGGATGCGGCGCGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACT 8496 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 |||||||||||| ||||| | ||| || || |||||||| || | |||||| |||| Sbjct 8495 CGTTGTTGCCGAGGATCTGCGAGGTCGACGCAGTCGGCATGGGCGCGACGAGCAGCGAGT 8436 Query 204318 TGCGCACACCGT 204329 |||| | |||| Sbjct 8435 TGCGGAGGCCGT 8424 Score = 140 bits (154), Expect = 5e-28 Identities = 298/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| ||||||||||||||| || || || || || | | | || Sbjct 7675 CTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTC 7616 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| || | |||| ||| | | |||||||||||||||||||| | Sbjct 7615 CTTGCCGTGGTTCTTCTTGAGCTCCAAA-AAGTCAAAGATGTCGGCGTGCCACGGCTCGA 7557 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| | |||| || |||||||| || ||| | | Sbjct 7556 GATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGT 7497 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||||| | || ||||||||||| || |||||||| | ||| ||||| |||| | ||| Sbjct 7496 CGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGT 7437 Query 205404 CCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 |||| || | | || ||| | || |||| || ||||||| |||||| Sbjct 7436 ACGAGTTGGAGGCGCGGATGCGGTGGGCA--GCGACGCCGATACCGCCAGCTGACTTGGA 7379 Query 205462 GATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 ||| ||||||||| |||| || ||| |||||| || |||| || || ||| || | Sbjct 7378 GATGAGGGCGCACTGCTTG-AGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGG 7320 Query 205521 TCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGC 205580 | | || ||||||| | |||| | | |||||| |||| |||||| ||||| Sbjct 7319 TGAGGAGGAAGCACGACGAAAGCTGTGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGCG 7260 Query 205581 TGGCGTGGCTGAAGCGCT 205598 |||||||| ||||| ||| Sbjct 7259 TGGCGTGGGTGAAGAGCT 7242 >seq79 Length=69635 Score = 161 bits (178), Expect = 2e-34 Identities = 337/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || ||||||||||| || ||||| |||| |||| | | | ||| ||||||||||| ||| Sbjct 67414 TCGACCGTGAACTGGATCGCGTTGGCGGCCGGCCGGGTGCGCAGGTAGTACATGCCCGTC 67355 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTG-CTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || ||| | ||| ||| || Sbjct 67354 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACGA-GGGCTC 67296 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || || || |||||||| Sbjct 67295 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGGTCGGCGGCCAT 67236 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTT 204080 | ||| ||| ||| | | |||||||||||| ||| | | | ||| || ||| | Sbjct 67235 GTCGATGATGACGCGCTGGGGCAGCTCCCACACCGTTTTGTAGAGCTTCT-TGATGTCGT 67177 Query 204081 GAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 ||| | || | | | | || || ||||||||||| | ||| | || | | Sbjct 67176 CAGGGATCTCGT-CGATGCGCTGGACCGAGCCGTTGTGCTGGACGAGTTTGTTCTTGAGC 67118 Query 204140 TCCTCCCCCCACATGC--CCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | | ||| | || | | ||| ||||| |||| |||||| ||||| || Sbjct 67117 TGCGGGGACCAGAGGCCGCGCAGCTG--GAGCTCGCGCAACAGGTGCTCGTTGACGACGG 67060 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 ||||| |||| || | | || ||| | | |||| | ||| | || || || || Sbjct 67059 TGAAGTCGCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACT 67000 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 |||||||||||| ||||| | ||| ||| || |||||||| || | |||||| |||| Sbjct 66999 CGTTGTTGCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATGGGCGCGACGAGCAGCGAGT 66940 Query 204318 TGCGCACACCGT 204329 |||| | |||| Sbjct 66939 TGCGGAGGCCGT 66928 Score = 140 bits (154), Expect = 5e-28 Identities = 298/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| ||||||||||||||| || || || || || | | | || Sbjct 66179 CTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTC 66120 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| || | |||| ||| | | |||||||||||||||||||| | Sbjct 66119 CTTGCCGTGGTTCTTCTTGAGCTCCAAA-AAGTCAAAGATGTCGGCGTGCCACGGCTCGA 66061 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| | |||| || |||||||| || ||| | | Sbjct 66060 GGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGT 66001 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||||| | || ||||||||||| || |||||||| | ||| ||||| |||| | ||| Sbjct 66000 CGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGT 65941 Query 205404 CCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 |||| || | | || ||| | || |||| || ||||||| |||||| Sbjct 65940 ACGAGTTGGAGGCGCGGATGCGGTGGGCA--GCGACGCCGATACCGCCAGCTGACTTGGA 65883 Query 205462 GATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 ||| ||||||||| |||| || ||| |||||| || |||| || || ||| || | Sbjct 65882 GATGAGGGCGCACTGCTTG-AGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGG 65824 Query 205521 TCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGC 205580 | | || ||||||| | |||| | | |||||| |||| |||||| ||||| Sbjct 65823 TGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGTG 65764 Query 205581 TGGCGTGGCTGAAGCGCT 205598 |||||||| ||||| ||| Sbjct 65763 TGGCGTGGGTGAAGAGCT 65746 >seq7035 Length=2989 Score = 159 bits (176), Expect = 6e-34 Identities = 303/438 (69%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||| ||||| |||||||| |||| |||| | ||||||||||| || Sbjct 1153 AGGTAGTACATGCCAGTCTTGAGGCCCTTGCGCCAGGCGTAAAAGTGCATGGAAGTGAGC 1094 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 || | | |||| | ||||||| | ||| || |||||||| |||||||| | | | Sbjct 1093 GTGGCAAAGGTGGGAGCCGCCATGTAGAGGTTGAGCGACTGGCTCTGGTCGATATAGGCC 1034 Query 204005 GCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 | || || ||||||| | ||| ||| |||||| |||||||| |||||||| | Sbjct 1033 GAGCGGTCGGCGGCCAGGTCGATGATGACACGCTGCGAGATCTCCCATGCCGTCTTGTAG 974 Query 204065 ACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCAT 204123 | | | || || || || | | | | | ||| || | ||||||| || || || Sbjct 973 AGGGCCTTGAGGTCCTGTGGGATGGCGT-CGATGTCTTGTACGGAGCCGTGGTTGG-CAA 916 Query 204124 CAGTCTCA-TCCTCGTCTCCTCCCCCCACATGCCCAACCTG-ATCAGCTCCCGCACCAGG 204181 | | || || || || | ||| ||| | |||| | || || || || ||||| ||| Sbjct 915 CGATGGCATTCTTCATCCCGTCCGTCCAGA-GCCCGAGTTGCATGAGGTCGCGCACGAGG 857 Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 || ||||||| | | ||||| ||| ||||| || ||||||||||| | | | Sbjct 856 TGCGGGTTGACCACCACGAAGTCGCCGCCGAGCACGATGCGCTTGAACAGGTTGGTCGCG 797 Query 204242 AATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGA 204301 | ||||||||| ||||| |||||| | ||||| | || |||||||||||| || Sbjct 796 TAGGGTTCGAACCCCTCGCAGTTGCCCAGGATCTGGGACGTCGAGGCCGTGGGCATCGGT 737 Query 204302 GCCAGGAGCAGGGAGTTG 204319 |||| || || |||||| Sbjct 736 GCCACCAGTAGAGAGTTG 719 >seq803 Length=10940 Score = 136 bits (150), Expect = 6e-27 Identities = 536/836 (64%), Gaps = 19/836 (2%) Strand=Plus/Minus Query 159653 TCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTTC 159712 ||||| |||||||||||||| || | || || ||||| || ||| ||||| Sbjct 2575 TCGAAGAAGTTGGTCTTGCCTTCAAGCGAAATAAGCTCCATCCACGGGAACGGGTTGGAT 2516 Query 159713 ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATG 159772 || ||| |||| | | |||||||| | || | || ||| || || || |||||| Sbjct 2515 GAGTTGTAGTGCTTGTCACAGCCGAGAGCGACGAGAAGCCGGTCGGCGACGAACTCGATG 2456 Query 159773 TAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGA 159832 || ||||| | | ||| || || | || ||||| |||| ||||| | Sbjct 2455 TACTGGCACATGAGGTTGGCGTTCATGCCAATAAGAGCCACGGGCAGCGATTCCGTGACG 2396 Query 159833 AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTACCCCGG 159891 ||||||||||| |||||||| || || || |||||| | ||||| || | || Sbjct 2395 AACTCCTTCTCGATCTCGACAGCCTCAAGGACGATCTGCTTGGGCACGTCGGT-CGAGGG 2337 Query 159892 CTTGC---CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||| ||| ||| || | |||||||| ||||||||||||||||| ||||| Sbjct 2336 CTTGTTGACCAGCATGCCGT------AGAGGAGGCAAGCAAAGTCGCAGTGCAGACCCTC 2283 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 ||| || ||| | ||||||| | | || || ||||| | || ||| ||||| Sbjct 2282 GTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCGGGCATCAGGCCGCGCTTCTTGAG 2223 Query 160009 CCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || |||| ||| |||| ||| || ||||| ||||| || || || || | | Sbjct 2222 CCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAAGATGCCCTCGACCGCGGCGAAGCCGA 2164 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG---TCCACCTTTTGGCCCATTCAG 160124 ||| | ||| || | || || | | |||| | ||||||| || | Sbjct 2163 TGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAAATCCAGCGCATGGCCCACTCGG 2104 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| | | |||| ||| | ||| || | ||||| ||| || Sbjct 2103 CCTTCTTCTTCACCGAGGGCACAGTCTCCATGGCCCGGAAGAGGTGGTCCTTCTCGATCG 2044 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 ||| || | || | || || |||||||||||| | ||| | || ||||| | Sbjct 2043 GATCTTTAACGTAGGTGTCGATGAGGAGCGAGTACATTTCCGAGTGGATGTTCTCGATAG 1984 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTT 160304 | ||||| ||| |||||| | |||||| | |||||| |||| |||| | Sbjct 1983 CGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACTTCCTTCATGAAGCGGC 1924 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | |||| || | || | || ||| ||| || ||||| |||| |||||| || Sbjct 1923 CAGCCAGGTTCTCGGCGACGATGCCATCGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGA 1864 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAAT 160424 |||| || ||||||| |||||||| | ||||||| ||| ||| | ||||| Sbjct 1863 TGAAGTGCTTCTCGTCGTTGTTGAG---CGAAGCCCAGTGCTTCATGTCGGCGCTCAAAT 1807 Query 160425 CAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 | ||||| || ||| |||| | |||| || | |||||||| |||| ||| Sbjct 1806 CGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAAATG 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795048420596080