Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq79 149 8e-31 seq3619 145 9e-30 seq6640 104 3e-17 seq803 104 3e-17 >seq79 Length=69635 Score = 149 bits (164), Expect = 8e-31 Identities = 566/877 (65%), Gaps = 31/877 (4%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || || ||||| | || ||| | || | || Sbjct 65657 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 65716 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| |||||| | | || | | |||| |||||| ||||| |||||||| Sbjct 65717 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCCACCCTCTT 65776 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || | || || ||||| | | | |||||||| Sbjct 65777 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 65836 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| | || |||| ||||| |||| ||||| Sbjct 65837 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 65896 Query 111851 TGGTATCGG----GATGCACATC-CATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 |||||||| | ||| || | ||| | | ||| ||| |||||| || | | Sbjct 65897 CGGTATCGGCGTCGCTGCCCACCGCAT-----CCGCGCCTCCAA--CTCGTACATTCGCG 65949 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 65950 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 66009 Query 111964 GCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| || |||| | || | |||||||| | | || |||| || ||||| | Sbjct 66010 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGT 66069 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--C 112078 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 66070 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 66129 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 66130 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 66187 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 | | ||| | ||||| ||||| || || || |||| ||||| || | || | Sbjct 66188 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 66247 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--G 112256 ||| |||||||||| | || |||||| || | | ||| | || | Sbjct 66248 GGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCC--GCGCCCGCCGG 66305 Query 112257 ACGGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 ||| | || ||| || | ||| || || ||| |||| || | ||||||||| Sbjct 66306 GTGGT-CAAG--GCCCAGGAGCTTTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGC 66362 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 || || || ||||| ||||| |||||||| ||| ||| || || || | |||| Sbjct 66363 ACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGC 66422 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 |||| || || ||||| ||||| || || | | | || || || | Sbjct 66423 ACGATCCAGTCGTCGAACCTGTGTACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTG 66482 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT 112470 || ||||| ||||| || || ||||| || ||||||| Sbjct 66483 GCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAAGT 66519 >seq3619 Length=11060 Score = 145 bits (160), Expect = 9e-30 Identities = 405/615 (66%), Gaps = 21/615 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || || ||||| | || ||| | || | || Sbjct 7153 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 7212 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| |||||| | | || | | |||| |||||| || || |||||||| Sbjct 7213 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACGCCCACCCTCTT 7272 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || | || || ||||| | | | |||||||| Sbjct 7273 CAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 7332 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| | || |||| ||||| |||| ||||| Sbjct 7333 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 7392 Query 111851 TGGTATCGG----GATGCACATC-CATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 |||||||| | ||| || | ||| | | ||| ||| |||||| || | | Sbjct 7393 CGGTATCGGCGTCGCTGCCCACCGCAT-----CCGCGCCTCCAA--CTCGTACATTCGCG 7445 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 7446 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 7505 Query 111964 GCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| || |||| | || | |||||||| | | || ||||||| ||||| | Sbjct 7506 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 7565 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--C 112078 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 7566 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 7625 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 7626 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 7683 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 | | ||| | ||||| ||||| || || || |||| ||||| || | || | Sbjct 7684 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 7743 Query 112199 GGGTGAGGAGTTTGA 112213 ||| |||||||||| Sbjct 7744 GGGCAAGGAGTTTGA 7758 >seq6640 Length=3469 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 2140 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2199 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 2200 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2259 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || |||||||| || ||| || ||||| Sbjct 2260 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2299 >seq803 Length=10940 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 2146 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2205 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 2206 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2265 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || |||||||| || ||| || ||||| Sbjct 2266 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620659042054960