Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq79 219 5e-52 seq3619 210 3e-49 seq6640 82.4 9e-11 seq803 82.4 9e-11 >seq79 Length=69635 Score = 219 bits (242), Expect = 5e-52 Identities = 578/872 (66%), Gaps = 23/872 (3%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 66519 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 66460 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || ||||||| ||| || || ||||| |||| | || ||||| || Sbjct 66459 GGATGACCTCCGTACACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 66400 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | ||||||| || ||||||||||||||||||||||| || ||||| |||| |||| || Sbjct 66399 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 66340 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 106689 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 66339 GGATCGCAAACCAAAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 66282 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 ||| || | |||||||||| ||| || ||| | || || || |||| Sbjct 66281 GTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 66222 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 66221 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 66162 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 66161 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 66103 Query 106870 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | ||| | || || | ||| || |||||||| ||||| || |||| || | | | Sbjct 66102 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGC 66043 Query 106929 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 66042 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCA 65983 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 107043 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 65982 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 65925 Query 107044 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 65924 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 65870 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 65869 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 65810 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || | |||||| | || || || || ||||||||||| ||||| ||||| |||| Sbjct 65809 GACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGTGTGGCGTGGGTGAAG 65750 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 65749 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 65690 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| ||| |||||||| | ||||| ||||| Sbjct 65689 CCGACGGCAACACGCATGAGCATGTGCTGGGG 65658 >seq3619 Length=11060 Score = 210 bits (232), Expect = 3e-49 Identities = 576/872 (66%), Gaps = 23/872 (3%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 8015 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 7956 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || ||||| |||| | || ||||| || Sbjct 7955 GGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 7896 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | ||||||| || ||||||||||||||||||||||| || ||||| |||| |||| || Sbjct 7895 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 7836 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 106689 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 7835 GGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 7778 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 ||| || | |||||||||| ||| || ||| | || || || |||| Sbjct 7777 GTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 7718 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 7717 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 7658 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 7657 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 7599 Query 106870 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | ||| | || || | ||| || |||||||| ||||| ||||||| || | | | Sbjct 7598 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGC 7539 Query 106929 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 7538 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCA 7479 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 107043 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 7478 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 7421 Query 107044 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 7420 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 7366 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 7365 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 7306 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || | ||| || | || || || || ||||||||||| || || ||||| |||| Sbjct 7305 GACGAAAGCTGTGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAG 7246 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 7245 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 7186 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| ||| |||||||| | ||||| ||||| Sbjct 7185 CCGACGGCAACACGCATGAGCATGTGCTGGGG 7154 >seq6640 Length=3469 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || ||| ||||| || || |||| || || Sbjct 2299 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2240 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 2239 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2180 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||||| || || || | | || ||||||| ||||| Sbjct 2179 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGG 2140 >seq803 Length=10940 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || ||| ||||| || || |||| || || Sbjct 2305 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2246 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 2245 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2186 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||||| || || || | | || ||||||| ||||| Sbjct 2185 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGG 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901572953320