Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq1215 118 1e-21 seq1255 116 5e-21 >seq1215 Length=59738 Score = 118 bits (130), Expect = 1e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 136646 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 136705 ||||||| ||||| ||||| |||||||||||||| |||| || ||||| || | |||| Sbjct 14367 AGCCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACTTCGACGAGATCGGTTTGGG 14426 Query 136706 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 136765 ||| |||||| ||||||||||||||||| || || ||||||| | | | | |||| Sbjct 14427 CCTGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGT 14486 Query 136766 CCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG 136818 | | || ||||| ||||| ||| | | | |||||||| || |||||| Sbjct 14487 CATGTCGACACTCGACGCCACGCGTGTCGTGCAGGTGGTCCTCGAGCGTGAAG 14539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 136897 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 136956 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 14671 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 14730 Query 136957 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137007 | || ||||||||||||||| |||||||| || || | | |||||| Sbjct 14731 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 14781 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/127 (76%), Gaps = 10/127 (8%) Strand=Plus/Plus Query 137533 CCGTGCGGGACGGCGTGCTCGAT---CAGC--GAGCGAAGCTTGGACAGGCTGTCGGGAA 137587 || || |||| ||| || ||||| |||| ||||| ||||| |||||| |||| | Sbjct 15509 CCATGGGGGATGGCCTGTTCGATGGCCAGCCGGAGCG--GCTTG---AGGCTGGCGGGCA 15563 Query 137588 GGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGA 137647 | || || || ||||||||||||||| || ||||||||||| || ||||| ||||| | Sbjct 15564 GATCGGAGGCTGTCAGGCTGGTGCGGGAGGCGATCATGCCGCAACCAATGTCCACGCCCA 15623 Query 137648 CGGCGGC 137654 |||| || Sbjct 15624 CGGCTGC 15630 >seq1255 Length=3069 Score = 116 bits (128), Expect = 5e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 136646 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 136705 ||||||| ||||| ||||| |||||||||||||| |||| || ||||| || | |||| Sbjct 2551 AGCCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACCTCGACGAGATCGGTTTGGG 2492 Query 136706 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 136765 ||| |||||| ||||||||||||||||| || || ||||||| | | | | |||| Sbjct 2491 CCTGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGT 2432 Query 136766 CCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAA 136817 | | || ||||| ||||| ||| | | | |||||||| || ||||| Sbjct 2431 CATGTCGACACTCGACGCCACGCGTGTCGTGCAGGTGGTCCTCGAGCGTGAA 2380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 136897 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 136956 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 2247 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 2188 Query 136957 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137007 | || |||||| |||||||| |||||||| || || | | |||||| Sbjct 2187 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690051322287600