Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1215 95.1 2e-14 seq1255 89.7 7e-13 >seq1215 Length=59738 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 ||||| ||||||||| ||||| ||||||||||| ||||||||||| | || | |||| Sbjct 14671 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 14730 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCC 139748 | || ||||||||||||||| |||||||| || || | | |||||| |||| Sbjct 14731 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 14787 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/125 (76%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 140268 CCGTGCGGGACGGCGTGCTCGAT---CAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGG 140324 || || |||| ||| || ||||| |||| | || ||||| |||||| ||||||| Sbjct 15509 CCATGGGGGATGGCCTGTTCGATGGCCAGCCGGAGCGGCTTG---AGGCTGGCGGGCAGA 15565 Query 140325 TCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACG 140384 || ||||| |||| |||||| ||| ||||||||||| || ||||||||||||||| Sbjct 15566 TCGGAGGCTGTCAGGCTGGTGCGGGAGGCGATCATGCCGCAACCAATGTCCACGCCCACG 15625 Query 140385 GCCGC 140389 || || Sbjct 15626 GCTGC 15630 >seq1255 Length=3069 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 ||||| ||||||||| ||||| ||||||||||| ||||||||||| | || | |||| Sbjct 2247 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 2188 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCC 139748 | || |||||| |||||||| |||||||| || || | | |||||| |||| Sbjct 2187 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 2131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715679880230400