Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq1215 87.8 3e-12 seq1255 84.2 3e-11 >seq1215 Length=59738 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 137456 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 137515 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 14671 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 14730 Query 137516 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137566 | || ||||||||||||||| |||||||| || || | | |||||| Sbjct 14731 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 14781 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/127 (76%), Gaps = 10/127 (8%) Strand=Plus/Plus Query 138092 CCGTGCGGGACGGCGTGCTCGAT---CAGC--GAGCGAAGCTTGGACAGGCTGTCGGGGA 138146 || || |||| ||| || ||||| |||| ||||| ||||| |||||| |||| | Sbjct 15509 CCATGGGGGATGGCCTGTTCGATGGCCAGCCGGAGCG--GCTTG---AGGCTGGCGGGCA 15563 Query 138147 GGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGA 138206 | || || || ||||||||||||||| || ||||||||||| || ||||| ||||| | Sbjct 15564 GATCGGAGGCTGTCAGGCTGGTGCGGGAGGCGATCATGCCGCAACCAATGTCCACGCCCA 15623 Query 138207 CGGCGGC 138213 |||| || Sbjct 15624 CGGCTGC 15630 >seq1255 Length=3069 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 137456 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 137515 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 2247 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 2188 Query 137516 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137566 | || |||||| |||||||| |||||||| || || | | |||||| Sbjct 2187 CGGGCGCTCACCGCTCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 2137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709626293260640