Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq210 159 2e-33 seq10647 147 1e-29 seq11 118 7e-21 seq1182 114 8e-20 seq5533 111 1e-18 seq1842 102 5e-16 seq1798 95.1 8e-14 seq1444 95.1 8e-14 seq8495 87.8 1e-11 seq588 86.0 4e-11 >seq210 Length=45014 Score = 159 bits (176), Expect = 2e-33 Identities = 265/383 (69%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 877880 TGGAAAGGAACTGAAGTTGCTGTAAAAGTAATTTCTTCGCAAAATATCACTAAAAACATG 877939 ||||| || || || || || || || || || | | | || ||||| ||| ||||| Sbjct 42617 TGGAAGGGCACCGAGGTGGCCGTCAAGGTCATGGCCGCCGAGAAGATCACGAAAGACATG 42676 Query 877940 GAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTG 877999 || | ||| | || || | || |||||||| ||||||||||| || || ||| Sbjct 42677 GAGAAGAACTTCCAGGACGAGGTGCGCGTCATGACCTCGCTCCGTCATCCGAACGTGGTG 42736 Query 878000 TTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATTATCATGGAGCACATGTCA 878059 | || ||||| || ||||| || || ||||| ||||| || | |||||| |||||| Sbjct 42737 CTCTTCATGGCCGCCTGCACCAAGCCGCCCAAGATGTGCATCGTGATGGAGTTCATGTCG 42796 Query 878060 CTTGGGTCAATGTATGAACTTTTAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTT 878119 || ||||| ||| || || | | || || || |||||||| ||||| | | || Sbjct 42797 CTCGGGTCGCTGTTCGACCTGCTGCACAACGAGCTCATTCCAGAGATTCCGTTCGTGCTC 42856 Query 878120 AAAATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATT 878179 || |||||||| || || || || || || ||||| ||| | ||||| || ||||| Sbjct 42857 AAGGCCAAGATGGCCTACCAGGCCTCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATC 42916 Query 878180 GTCCATAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTG 878239 || || | || |||||||| || || || || || || || ||||| || || ||| Sbjct 42917 GTGCACCGCGACCTCAAGTCGCTCAACCTGCTGCTCGACAACAAGTGGAACGTCAAGGTG 42976 Query 878240 AGTGATTTTGGTTTGACAAAGTT 878262 || ||||| ||||| ||||| Sbjct 42977 TCCGACTTTGGCTTGACCAAGTT 42999 >seq10647 Length=534 Score = 147 bits (162), Expect = 1e-29 Identities = 212/299 (71%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 877964 CGTGTCATGACTAAACTCCGTCATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAAAA 878023 || |||||||| ||||||||||| || || ||| | || ||||| || ||||| || Sbjct 19 CGCGTCATGACCTCGCTCCGTCATCCGAACGTGGTGCTCTTCATGGCCGCCTGCACCAAG 78 Query 878024 CCTCCCAAAATGTGTATTATCATGGAGCACATGTCACTTGGGTCAATGTATGAACTTTTA 878083 || ||||| ||||| || | |||||| |||||| || ||||| ||| || || | Sbjct 79 CCGCCCAAGATGTGCATCGTGATGGAGTTCATGTCGCTCGGGTCGCTGTTCGACCTGCTG 138 Query 878084 GAAAATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAGCA 878143 | || || || |||||||| ||||| | | || || |||||||| || || || Sbjct 139 CACAACGAGCTCATTCCAGAGATTCCGTTCGTGCTCAAGGCCAAGATGGCCTACCAGGCC 198 Query 878144 TCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTT 878203 || || || ||||| ||| | ||||| || ||||| || || | || |||||||| || Sbjct 199 TCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATCGTGCACCGCGACCTCAAGTCGCTC 258 Query 878204 AATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGATTTTGGTTTGACAAAGTT 878262 || || || || || || ||||| || || ||| || ||||| ||||| ||||| Sbjct 259 AACCTGCTGCTCGACAACAAGTGGAACGTCAAGGTGTCCGACTTTGGCTTGACCAAGTT 317 >seq11 Length=72697 Score = 118 bits (130), Expect = 7e-21 Identities = 256/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 877880 TGGAAAGGAACTGAAGTTGCTGTAAAAGTAATTTCTTCGCAAAATATCACTAAAAACATG 877939 ||||| || || || || || || || || || | | | || ||||| || ||||| Sbjct 43131 TGGAAGGGCACCGAGGTGGCCGTCAAGGTCATGGCGGCCGAGAAGATCACCAAGGACATG 43190 Query 877940 GAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTG 877999 || || ||| | || || | || || ||||| || || || || || || || Sbjct 43191 GAGAAAAGCTTCCAGGACGAGGTGCGCGTGATGACGTCGCTGCGCCACCCGAACGTCGTC 43250 Query 878000 TTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATTATCATGGAGCACATGTCA 878059 | || ||||| || | || || || ||||| ||||| || |||||||| |||| | Sbjct 43251 CTCTTCATGGCAGCCTCGACCAAGCCGCCCAAGATGTGCATCGTCATGGAGTTCATGGCT 43310 Query 878060 CTTGGGTCAATGTATGAACTTTTAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTT 878119 || || || | || || || | | ||||| || ||||| || ||||| | | || Sbjct 43311 CTCGGCTCCCTCTACGACCTCCTCCACAATGAGCTCATTCCCGAGATTCCGTTCGTGCTC 43370 Query 878120 AAAATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATT 878179 || |||||||| || || || || || || ||||| ||| | || || || ||||| Sbjct 43371 AAGGCCAAGATGGCCTACCAGGCGTCCAAGGGCATGCACTTCCTCCATTCGTCGGGCATC 43430 Query 878180 GTCCATAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTG 878239 || || | ||||||||||| || || || || || || || ||||| || || ||| Sbjct 43431 GTGCACCGCGATCTCAAGTCGCTCAACCTGCTGCTGGACAACAAGTGGAACGTCAAGGTG 43490 Query 878240 AGTGATTTTGGTTTGACAAAGTT 878262 ||| ||||| | || ||||| Sbjct 43491 TCTGACTTTGGCCTCACCAAGTT 43513 >seq1182 Length=1407 Score = 114 bits (126), Expect = 8e-20 Identities = 255/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 877880 TGGAAAGGAACTGAAGTTGCTGTAAAAGTAATTTCTTCGCAAAATATCACTAAAAACATG 877939 ||||| || || || || || || || || || | | | || ||||| || ||||| Sbjct 1242 TGGAAGGGCACCGAGGTGGCCGTCAAGGTCATGGCGGCCGAGAAGATCACCAAGGACATG 1183 Query 877940 GAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTG 877999 || | ||| | || || | || || ||||| || || || || || || || Sbjct 1182 GAGAAGAGCTTCCAGGACGAGGTGCGCGTGATGACGTCGCTGCGCCACCCGAACGTCGTC 1123 Query 878000 TTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATTATCATGGAGCACATGTCA 878059 | || ||||| || | || || || ||||| ||||| || |||||||| ||| | Sbjct 1122 CTCTTCATGGCAGCCTCGACCAAGCCGCCCAAGATGTGCATCGTCATGGAGTTTATGGCT 1063 Query 878060 CTTGGGTCAATGTATGAACTTTTAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTT 878119 || || || | || || || | | ||||| || ||||| || ||||| | | || Sbjct 1062 CTCGGCTCCCTCTACGACCTCCTCCACAATGAGCTCATTCCCGAGATTCCGTTCGTGCTC 1003 Query 878120 AAAATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATT 878179 || |||||||| || || || || || || ||||| ||| | ||||| || ||||| Sbjct 1002 AAGGCCAAGATGGCCTACCAGGCGTCCAAGGGCATGCACTTCCTCCACTCGTCGGGCATC 943 Query 878180 GTCCATAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTG 878239 ||||| | ||||||||||| || || || || || || || ||||| || || ||| Sbjct 942 GTCCACCGCGATCTCAAGTCGCTCAACCTGCTGCTGGACAACAAGTGGAACGTCAAGGTG 883 Query 878240 AGTGATTTTGGTTTGACAAAGTT 878262 || ||||| | || ||||| Sbjct 882 TCCGACTTTGGCCTCACCAAGTT 860 >seq5533 Length=4881 Score = 111 bits (122), Expect = 1e-18 Identities = 178/256 (70%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 877962 TTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAA 878021 |||| || ||||| || || || || ||||| ||| | || ||||| || | || | Sbjct 917 TTCGCGTGATGACGTCGCTTCGCCACCCGAATGTGGTGCTGTTCATGGCCGCGTCGACCA 976 Query 878022 AACCTCCCAAAATGTGTATTATCATGGAGCACATGTCACTTGGGTCAATGTATGAACTTT 878081 || | ||||| ||||| || ||||||||| |||| | ||||| || | | || || Sbjct 977 AAGCGCCCAAGATGTGCATCGTCATGGAGCTCATGGCGCTTGGCTCGCTCTTCGACCTGC 1036 Query 878082 TAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAG 878141 | | || || || ||||| || ||||| | | || || |||||||| || || | Sbjct 1037 TCCACAACGAGCTCATTCCCGACATTCCATTCGCGCTCAAGGCCAAGATGGCCTACCAGG 1096 Query 878142 CATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTC 878201 | || || || ||||| ||| | ||||| || || || ||||| | ||||||||||| | Sbjct 1097 CGTCCAAGGGCATGCACTTCCTGCACTCGTCGGGTATCGTCCACCGCGATCTCAAGTCGC 1156 Query 878202 TTAATCTACTACTAGA 878217 | || || || || || Sbjct 1157 TCAACCTTCTCCTCGA 1172 >seq1842 Length=18800 Score = 102 bits (112), Expect = 5e-16 Identities = 176/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 877962 TTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAA 878021 |||| || ||||| || || || || ||||| ||| | || ||||| || | || | Sbjct 3742 TTCGCGTGATGACGTCGCTTCGCCACCCGAATGTGGTGCTGTTCATGGCCGCGTCGACCA 3683 Query 878022 AACCTCCCAAAATGTGTATTATCATGGAGCACATGTCACTTGGGTCAATGTATGAACTTT 878081 || | ||||| ||||| || |||||||| |||| | || || || | | || || Sbjct 3682 AAGCGCCCAAGATGTGCATCGTCATGGAGTTCATGGCGCTCGGCTCGCTCTTCGACCTGC 3623 Query 878082 TAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAG 878141 | | || || || ||||| || || || | | || || |||||||| || || | Sbjct 3622 TCCACAACGAGCTCATTCCCGACATCCCATTCGCGCTCAAGGCCAAGATGGCCTACCAGG 3563 Query 878142 CATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTC 878201 | || || || ||||| ||| | ||||| || || || |||||| | ||||||||||| | Sbjct 3562 CGTCCAAGGGCATGCACTTCCTGCACTCGTCGGGTATCGTCCATCGCGATCTCAAGTCGC 3503 Query 878202 TTAATCTACTACTAGA 878217 | || || || || || Sbjct 3502 TCAACCTTCTCCTCGA 3487 >seq1798 Length=20266 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| |||| ||||| || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 18092 AAGGTGGCCTATCAGGCGTCAAAGGGCATGCACTTCTTGCACTCATCCGGCATCGTGCAT 18033 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | || ||||||||||| || || || || || | || ||||| || || || || Sbjct 18032 CGCGACCTCAAGTCTCTCAACCTCCTCCTTGACGCCAAGTGGAACGTCAAGGTCTCCGAC 17973 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| |||| ||||| Sbjct 17972 TTTGGCCTGACCAAGTT 17956 Score = 87.8 bits (96), Expect = 1e-11 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 879950 GTTGCTGATTTTGGTTTTGCCAGGATTAAAGCGGAAAATACTACTATGACAAGATGTGGT 880009 || ||||| ||||| ||||| |||| || | ||| || | || ||||| | ||||| Sbjct 15593 GTGGCTGACTTTGGCTTTGCGCGGATCAAGGAGGAGAACGCGACCATGACTCGCTGTGGC 15534 Query 880010 ACTCCTTGTTGGACTGCTCCAGAAATCATTCGTGGTGAAAAATATGACGAAAAGACCGAT 880069 || || || |||||||| || || | || ||||| || || |||||||| | | ||| Sbjct 15533 ACGCCCTGCTGGACTGCGCCTGAGGTGATCCGTGGCGAGAAGTATGACGAGCGGGCTGAT 15474 Query 880070 GTATTTTCATTTGGTATTGTTATGTGGGAAGTATTAACTGGTAAAGAACCTTTTGCAGGA 880129 | || || || || || ||||||||||||| | || || | |||| ||| ||| Sbjct 15473 CTCTTCTCCTTCGGCATCATTATGTGGGAAGTTCTCACCCGTCGTCAGCCTTATGCTGGA 15414 Query 880130 TATAATTTTATGAAAGTTTCTCTTGATATCTTGGAAGGCGCAAGACCTCAAATACCTTCT 880189 || || ||| || || |||||| | | || || | ||||| || || | Sbjct 15413 CGCAACTTCATGGGCGTCTCGCTTGATGTGCTCGAGGGACGTCGGCCTCAGATCCCCGCC 15354 Query 880190 GATTGTCC-CATTAATCTAAAGAAACTCATTAAAAAGTGTTGGCACTCAAATGCGAACAA 880248 || || || || | | ||| | |||| || ||||| |||||| ||| | | || Sbjct 15353 GACTGCCCTGATCACTTCAAACGCA-TCATGAAGAAGTGCTGGCACGGAAAGCCAGAGAA 15295 Query 880249 GAGACCTAGCATGGAAGAAGTG 880270 | | || ||||||||| ||| Sbjct 15294 GCGTCCCTCCATGGAAGATGTG 15273 >seq1444 Length=41509 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| |||| ||||| || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 2291 AAGGTGGCCTATCAGGCGTCAAAGGGCATGCACTTCTTGCACTCATCCGGCATCGTGCAT 2350 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | || ||||||||||| || || || || || | || ||||| || || || || Sbjct 2351 CGCGACCTCAAGTCTCTCAACCTCCTCCTCGACGCCAAGTGGAACGTCAAGGTCTCCGAC 2410 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| |||| ||||| Sbjct 2411 TTTGGCCTGACCAAGTT 2427 Score = 87.8 bits (96), Expect = 1e-11 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 879950 GTTGCTGATTTTGGTTTTGCCAGGATTAAAGCGGAAAATACTACTATGACAAGATGTGGT 880009 || ||||| ||||| ||||| |||| || | ||| || | || ||||| | ||||| Sbjct 4771 GTGGCTGACTTTGGCTTTGCGCGGATCAAGGAGGAGAACGCGACCATGACTCGCTGTGGC 4830 Query 880010 ACTCCTTGTTGGACTGCTCCAGAAATCATTCGTGGTGAAAAATATGACGAAAAGACCGAT 880069 || || || |||||||| || || | || ||||| || || |||||||| | | ||| Sbjct 4831 ACGCCCTGCTGGACTGCGCCTGAGGTGATCCGTGGCGAGAAGTATGACGAGCGGGCTGAT 4890 Query 880070 GTATTTTCATTTGGTATTGTTATGTGGGAAGTATTAACTGGTAAAGAACCTTTTGCAGGA 880129 | || || || || || ||||||||||||| | || || | |||| ||| ||| Sbjct 4891 CTCTTCTCCTTCGGCATCATTATGTGGGAAGTTCTCACCCGTCGTCAGCCTTATGCTGGA 4950 Query 880130 TATAATTTTATGAAAGTTTCTCTTGATATCTTGGAAGGCGCAAGACCTCAAATACCTTCT 880189 || || ||| || || |||||| | | || || | ||||| || || | Sbjct 4951 CGCAACTTCATGGGCGTCTCGCTTGATGTGCTCGAGGGACGTCGGCCTCAGATCCCCGCC 5010 Query 880190 GATTGTCC-CATTAATCTAAAGAAACTCATTAAAAAGTGTTGGCACTCAAATGCGAACAA 880248 || || || || | | ||| | |||| || ||||| |||||| ||| | | || Sbjct 5011 GACTGCCCTGATCACTTCAAACGCA-TCATGAAGAAGTGCTGGCACGGAAAGCCAGAGAA 5069 Query 880249 GAGACCTAGCATGGAAGAAGTG 880270 | | || ||||||||| ||| Sbjct 5070 GCGTCCCTCCATGGAAGATGTG 5091 >seq8495 Length=3003 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || || || | | | || || || ||||| ||||| || || | ||||| Sbjct 918 TTGTACTCGGCGAGCGTGCGGCTCTCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGTTGC 977 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||||||||||||||| || | ||| || ||||| ||||| || | || Sbjct 978 TGGTCGGGAGGAATTCCTTCCTTGTCCTGCAGCTTGTGCTTGACGGCTTCGATGGAGTCG 1037 Query 480714 GTGTGTGAAGT---TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGG 480770 | | ||| | || ||||| || | || |||||||| ||||| | ||| || || Sbjct 1038 GAG---GAACTCACCTCCAGGGTGATGGACTTGCCGGTGAGGGTCTTGATGAAGATCTGC 1094 Query 480771 AACGA 480775 | ||| Sbjct 1095 ATCGA 1099 >seq588 Length=9902 Score = 86.0 bits (94), Expect = 4e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 877865 GTTTATAAAGCGACTTGGAAAGGAACTGAAGTTGCTGTAAAAGTAATTTCTTCGCAAAAT 877924 ||| | ||||| | ||||||||||||||||| || || || || || || |||| | Sbjct 5228 GTTCACAAAGCCATCTGGAAAGGAACTGAAGTGGCAGTCAAGGTGATGTCCTCGCGCGAC 5287 Query 877925 ATCACTAAAAACATGGAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTCCGT 877984 || | ||| | ||||| | || ||||||| | || || ||||| || || Sbjct 5288 GTCTCGAAAGAGATGGAGCGGAATTTCCGCGATGAAGTGCGAGTGATGACAGCGCTGCGG 5347 Query 877985 CATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATT 878041 ||||| || || ||| | || ||||| || | ||| ||||||||||| ||||| ||| Sbjct 5348 CATCCGAACGTGGTGCTCTTCATGGCGGCCTCCACCAAACCTCCCAAGATGTGCATT 5404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267718380604964