Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq79 185 1e-41 seq3619 172 7e-38 seq6640 82.4 9e-11 seq803 82.4 9e-11 >seq79 Length=69635 Score = 185 bits (204), Expect = 1e-41 Identities = 572/872 (66%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 65657 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 65716 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| |||||| | | || ||| | |||| ||||| ||||| |||||||| Sbjct 65717 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCCACCCTCTT 65776 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | |||||| | || |||||||| || ||| |||||||| Sbjct 65777 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 65836 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 65837 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 65896 Query 75451 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 65897 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 65949 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 65950 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 66009 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || | || ||||| | || || | Sbjct 66010 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGT 66069 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| ||||| ||| | || || | ||| | | || ||||| || | || ||| Sbjct 66070 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGA-AGAACCACGGCAAGGAGGAGAAC 66128 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | || ||||| | ||||||||| || ||||| ||||||||||| || ||| Sbjct 66129 CGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 66188 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||||| || ||||| || || |||| || || || | ||| || | Sbjct 66189 TCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGG 66248 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 || |||||||||| | || || || |||||| | ||| || | Sbjct 66249 GGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGCGCC-CGCCGGGT 66307 Query 75860 GTACCA-GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | | ||| || ||||| || || ||| | || |||| |||||||| || || Sbjct 66308 GGTCAAGGCCCAGGAGCTTTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 66367 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 || ||||| |||||||| || || |||| ||| ||||| || | |||| || || Sbjct 66368 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 66427 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | || || || || || ||||| | | ||||||| || || ||| || Sbjct 66428 CCAGTCGTCGAACCTGTGTACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 66487 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 ||||| |||| || |||||||| || |||| Sbjct 66488 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGT 66519 >seq3619 Length=11060 Score = 172 bits (190), Expect = 7e-38 Identities = 569/872 (65%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 7153 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 7212 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| |||||| | | || ||| | |||| ||||| || || |||||||| Sbjct 7213 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACGCCCACCCTCTT 7272 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | || ||| | || |||||||| || ||| |||||||| Sbjct 7273 CAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 7332 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 7333 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 7392 Query 75451 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 7393 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 7445 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 7446 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 7505 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || | || |||| | || || | Sbjct 7506 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 7565 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| ||||| ||| | || || | ||| | | || ||||| || | || ||| Sbjct 7566 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGA-AGAACCACGGCAAGGAGGAGAAC 7624 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | || ||||| | ||||||||| || ||||| ||||||||||| || ||| Sbjct 7625 CGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 7684 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||||| || ||||| || || |||| || || || | ||| || | Sbjct 7685 TCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGG 7744 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 || |||||||||| | || || || |||||| | ||| || | Sbjct 7745 GGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGCGCC-CGCCGGGT 7803 Query 75860 GTACCA-GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | | ||| || | ||| || || ||| | || |||| |||||||| || || Sbjct 7804 GGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 7863 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 || ||||| |||||||| || || |||| ||| ||||| || | |||| || || Sbjct 7864 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 7923 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | || || || || |||||||| | | ||||||| || || ||| || Sbjct 7924 CCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 7983 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 ||||| |||| || |||||||| || |||| Sbjct 7984 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGT 8015 >seq6640 Length=3469 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||| ||||||| || | | || || || ||||| |||||||||||||| || | Sbjct 2140 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2199 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | |||||||| || || ||||| || || |||| || | Sbjct 2200 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2259 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| ||| || |||||||| ||| || ||||| Sbjct 2260 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2299 >seq803 Length=10940 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||| ||||||| || | | || || || ||||| |||||||||||||| || | Sbjct 2146 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2205 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | |||||||| || || ||||| || || |||| || | Sbjct 2206 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2265 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| ||| || |||||||| ||| || ||||| Sbjct 2266 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596489488159840