Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5638 118 3e-21 seq10 118 3e-21 seq8813 107 6e-18 seq5710 107 6e-18 seq634 107 6e-18 >seq5638 Length=5150 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 396 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 455 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT-CGGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | || ||||| || Sbjct 456 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAA-A 514 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 515 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 574 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || ||| | | ||| Sbjct 575 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTT--GATCGCCGAACCC 632 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 633 TTGGAGCCGGCAATCACCAT 652 >seq10 Length=163601 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 101742 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 101801 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT-CGGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | || ||||| || Sbjct 101802 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAA-A 101860 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 101861 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 101920 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || ||| | | ||| Sbjct 101921 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTT--GATCGCCGAACCC 101978 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 101979 TTGGAGCCGGCAATCACCAT 101998 >seq8813 Length=1380 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | || ||| || || ||||| || | ||| || || ||| || | || Sbjct 87 GGCGATCATGCCGCACAGATCGCATACATGCACTCGGTAGGCGTCCGATTGATCGAAGAG 146 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| ||| | | || ||||| || ||||| || || |||||||| || || Sbjct 147 CCGCTCCTTGAGGAACTGGGCAGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCC 206 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| |||||||||||||| || | | |||||| | ||||| || ||||| | || Sbjct 207 GAATCGAAGACCACCATCACGCGAACGACCCTCTACGGGCTGCCGGGTGAGGATCTGCAC 266 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | || || |||||||| ||||| ||||| || ||||||||| | Sbjct 267 GGGGCCGCGCGCACGCGAGTGGATCTTATCATCCACCATGTGCTTCAGTCGCTGGTAGTA 326 Query 251643 TGCGGGACCGATGAAGA 251659 | || |||||||||| Sbjct 327 GGTCGGTCCGATGAAGA 343 >seq5710 Length=4298 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | || ||| || || ||||| || | ||| || || ||| || | || Sbjct 3961 GGCGATCATGCCGCACAGATCGCATACATGCACTCGGTAGGCGTCCGATTGATCGAAGAG 4020 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| ||| | | || ||||| || ||||| || || |||||||| || || Sbjct 4021 CCGCTCCTTGAGGAACTGGGCAGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCC 4080 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| |||||||||||||| || | | |||||| | ||||| || ||||| | || Sbjct 4081 GAATCGAAGACCACCATCACGCGAACGACCCTCTACGGGCTGCCGGGTGAGGATCTGCAC 4140 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | || || |||||||| ||||| ||||| || ||||||||| | Sbjct 4141 GGGGCCGCGCGCACGCGAGTGGATCTTATCATCCACCATGTGCTTCAGTCGCTGGTAGTA 4200 Query 251643 TGCGGGACCGATGAAGA 251659 | || |||||||||| Sbjct 4201 GGTCGGTCCGATGAAGA 4217 >seq634 Length=29013 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | || ||| || || ||||| || | ||| || || ||| || | || Sbjct 28147 GGCGATCATGCCGCACAGATCGCATACATGCACTCGGTAGGCGTCCGATTGATCGAAGAG 28088 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| ||| | | || ||||| || ||||| || || |||||||| || || Sbjct 28087 CCGCTCCTTGAGGAACTGGGCAGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCC 28028 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| |||||||||||||| || | | |||||| | ||||| || ||||| | || Sbjct 28027 GAATCGAAGACCACCATCACGCGAACGACCCTCTACGGGCTGCCGGGTGAGGATCTGCAC 27968 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | || || |||||||| ||||| ||||| || ||||||||| | Sbjct 27967 GGGGCCGCGCGCACGCGAGTGGATCTTATCATCCACCATGTGCTTCAGTCGCTGGTAGTA 27908 Query 251643 TGCGGGACCGATGAAGA 251659 | || |||||||||| Sbjct 27907 GGTCGGTCCGATGAAGA 27891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471615012126391