Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq1255 89.7 1e-13 seq1215 86.0 2e-12 >seq1255 Length=3069 Score = 89.7 bits (98), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 37288 TGCAGCCACGGTGCCGGTCGAATG-ATGAGC-CGGGCCGAAGCAAAACGCCGGTTCACAG 37345 ||||||||||| ||||| || || || || |||| | ||| || || | |||||| Sbjct 2329 TGCAGCCACGGAGCCGGGCGCGTGCATTCGCGCGGGGC--AGCCAAGCGGCTGTTCACGC 2386 Query 37346 TCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCG 37405 ||||||| || | | ||| || ||||||| || | || ||||| | | | Sbjct 2387 TCGAGGACCACCTGCACGACACGCGTGGCGTCGAGTGTCGACATGACGCCGACCTCCTGG 2446 Query 37406 ACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGG 37465 |||| ||||| || |||||||||||||| || |||||| || ||| ||| || | Sbjct 2447 ACGAAACGCCTCGAGCGTACAAGGACATCGACGCCGTCATGCAGGCCCAAACCGATCTCG 2506 Query 37466 TGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 | || |||||||||| || || ||| ||||||| ||||| ||| Sbjct 2507 TCGAGGTCGTGCACACCCTCAAGCAGGTCCTTTGCGTCAAGGGCTGA 2553 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 37150 CACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGAC 37209 ||||| ||| ||||| | || || ||||| || || || | |||||| ||||||| Sbjct 2138 CACTTTGGCAAGGACGTGTTCGTGACGCGCAAGGGAGCGGTGAGCGCCCGCAAGGGCGAG 2197 Query 37210 CTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGG 37259 |||||||||||||||||||||||||| || || | |||||| ||||| Sbjct 2198 CTGGGCATCATCCCTGGCTCGATGGGCGCCAAAAGCTACATCGTCCGCGG 2247 >seq1215 Length=59738 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 37150 CACTTCGGCGCAAACGTGCTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGAC 37209 ||||| ||| ||||| | || || ||||| || || || | |||||| ||||||| Sbjct 14780 CACTTTGGCAAGGACGTGTTCGTGACGCGCAAGGGCGCGGTGAGCGCCCGCAAGGGCGAG 14721 Query 37210 CTGGGCATCATCCCTGGCTCGATGGGTGCGAAGTCATTCATCGTTCGCGG 37259 |||||||||||||||||||||||||| || || | |||||| ||||| Sbjct 14720 CTGGGCATCATCCCTGGCTCGATGGGCGCCAAAAGCTACATCGTCCGCGG 14671 Score = 84.2 bits (92), Expect = 6e-12 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 37288 TGCAGCCACGGTGCCGGTCGAATG-ATGAGC-CGGGCCGAAGCAAAACGCCGGTTCACAG 37345 ||||||||||| ||||| || || || || |||| | ||| || || | ||||| Sbjct 14589 TGCAGCCACGGAGCCGGGCGCGTGCATTCGCGCGGGGC--AGCTAAGCGGCTCTTCACGC 14532 Query 37346 TCGAGGATCATGAGGCGGCCACCAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGATCG 37405 ||||||| || | | ||| || ||||||| || | || ||||| | | | Sbjct 14531 TCGAGGACCACCTGCACGACACGCGTGGCGTCGAGTGTCGACATGACGCCGACCTCCTGG 14472 Query 37406 ACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCCTGG 37465 |||| ||||| || |||||||||||||| || |||||| || ||| ||| || | Sbjct 14471 ACGAAACGCCTCGAGCGTACAAGGACATCGACGCCGTCATGCAGGCCCAAACCGATCTCG 14412 Query 37466 TGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGA 37512 | || |||||||||| || || ||| ||||||| ||||| ||| Sbjct 14411 TCGAAGTCGTGCACACCCTCAAGCAGGTCCTTTGCGTCAAGGGCTGA 14365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139265431206916