Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5693 95.1 1e-14 seq3696 89.7 4e-13 seq206 89.7 4e-13 seq1020 87.8 1e-12 seq2145 86.0 5e-12 seq358 86.0 5e-12 seq179 86.0 5e-12 >seq5693 Length=7660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || ||||| |||| ||| | || Sbjct 3020 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACTATTACGCTCGAGGTCGAGTCGAGC 3079 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||||| || || || ||| | ||| ||| ||| Sbjct 3080 GATACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3139 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||||| | || |||| ||||||||| Sbjct 3140 CAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTGGCCGACTACAAC 3199 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 3200 ATCCAGAAGGAGTCGAC 3216 >seq3696 Length=15212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| |||||||| |||| ||| | || Sbjct 11181 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTTGAGTCGAGC 11240 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 11241 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 11300 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 11301 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAAC 11360 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 11361 ATTCAGAAGGAGTCGAC 11377 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || ||||| |||| ||| | || Sbjct 10953 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACTATTACGCTCGAGGTTGAGTCGAGC 11012 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | || || ||| Sbjct 11013 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 11072 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || ||||| ||||||| || |||| ||||||||| Sbjct 11073 CAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACGCTGGCCGACTACAAC 11132 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 11133 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 11162 >seq206 Length=17459 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| |||| ||| | || Sbjct 12388 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATTACGCTCGAGGTTGAGTCGAGC 12329 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 12328 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 12269 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | || || || ||||| ||||||| | || | || ||||||||| Sbjct 12268 CAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAAC 12209 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || ||||||||||| Sbjct 12208 ATCCAGAAGGAGTCTAC 12192 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || || || || |||| ||| | || Sbjct 12616 ATGCAGATCTTCGTCAAGACCCTTACGGGAAAGACGATCACGCTCGAGGTCGAGTCCAGC 12557 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 12556 GATACTATTGAGAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 12497 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 12496 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCTGACTACAAC 12437 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| ||||| Sbjct 12436 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 12407 >seq1020 Length=19758 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || || ||| | || ||||| |||||||| |||| ||| | Sbjct 15902 AATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATTACGCTCGAGGTCGAGTCGTC 15961 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || || || |||||| || || || || | ||| ||| || Sbjct 15962 CGACACCATTGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCA 16021 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | |||||| || ||||| ||||||| || |||| |||||||| Sbjct 16022 GCAGCGCCTCATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACGCTGGCCGACTACAA 16081 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 16082 CATCCAGAAGGAGTCCACCCTTCACTTGGTG 16112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| |||||||| |||| ||| | Sbjct 16131 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCTCG 16190 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | ||| ||| ||| Sbjct 16191 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 16250 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 16251 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCTTGGCCGACTACAAC 16310 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 16311 ATCCAGAAGGAGTCGAC 16327 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| ||||| || | || ||| | || Sbjct 16359 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCGAGC 16418 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | ||| ||| ||| Sbjct 16419 GACACGATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 16478 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 16479 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAAC 16538 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 16539 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 16568 >seq2145 Length=7803 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| || ||||| |||| ||| | || Sbjct 2197 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACTATTACGCTCGAGGTCGAGTCCAGC 2256 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 2257 GATACTATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2316 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || |||| ||||||||| Sbjct 2317 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 2376 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2377 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 2406 >seq358 Length=114647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| |||||||| |||| ||| | Sbjct 5378 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCCTCG 5319 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || |||||| || || || ||| | ||| ||| ||| Sbjct 5318 GACACGATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 5259 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || | || ||||||||| Sbjct 5258 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAAC 5199 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 5198 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 5169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || || || || |||| ||| || || Sbjct 5606 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCTAGC 5547 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 5546 GATACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 5487 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 5486 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCTTGGCCGACTACAAC 5427 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 5426 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 5397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||| |||||||| |||| ||| | Sbjct 5834 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATTACGCTCGAGGTCGAGTCCTCG 5775 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||||| || || || || | ||| ||| ||| Sbjct 5774 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 5715 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | |||||| || ||||| ||||||| || |||| ||||||||| Sbjct 5714 CAGCGCCTCATCTTTGCGGGCAAGCAGCTCGAGGACGGTCGCACGCTGGCCGACTACAAC 5655 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 5654 ATCCAGAAGGAGTCCACCCTCCACTTGGTG 5625 >seq179 Length=82183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| |||||||| |||| ||| | || Sbjct 50725 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACCATTACGCTCGAGGTCGAGTCGAGC 50666 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || |||||||| || || || ||| | ||| ||| ||| Sbjct 50665 GACACGATCGAGAACGTTAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 50606 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | | || | || ||||||||| Sbjct 50605 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCGCTGACTACAAC 50546 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 50545 ATCCAGAAGGAGTCGAC 50529 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || || || || |||| ||| || || Sbjct 50953 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACGATCACGCTCGAGGTCGAGTCTAGC 50894 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||||| || || || ||| | ||| ||| ||| Sbjct 50893 GATACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 50834 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| | || |||| ||||||||| Sbjct 50833 CAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCTTGGCCGACTACAAC 50774 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 50773 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 50744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398824574935927