Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1939 91.5 1e-13 seq404 82.4 6e-11 >seq1939 Length=16232 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| |||||||| || || ||||| || || || ||||| || || || Sbjct 13696 CCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 13755 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || || || ||||| || | || | | ||||| || ||||| Sbjct 13756 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 13815 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || || || || | || | ||||| || || || Sbjct 13816 ATGCCCTCTTTGTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACC 13875 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || ||||| || | ||| || || || ||||||||| Sbjct 13876 TCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 13923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | ||||| || || || || || ||||| || || || Sbjct 13468 CCGCCACGCAGACGGAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 13527 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| || ||||| || |||||||| | || | | ||||| ||||| ||| Sbjct 13528 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 13587 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | || || || || | || | ||||| || || || Sbjct 13588 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACC 13647 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || || || |||||||| Sbjct 13648 TCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 13694 >seq404 Length=26703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || ||||| || || ||||| || || || | ||| || || || || || Sbjct 18682 TGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGC 18623 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | || | | ||||| ||||| ||||||||||| || || || | || Sbjct 18622 TTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATCTTC 18563 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || || | || | ||||| || || || || ||||| ||||| || || || Sbjct 18562 TGCTTCACGTTCTCGATGGTGTCCGACGACTCGACCTCGAGAGTAATAGTCTTACCCGTC 18503 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| Sbjct 18502 AAGGTCTTGACGAAGATCTGCAT 18480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385168763129763