Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq8813 93.3 4e-14 seq634 93.3 4e-14 >seq8813 Length=1380 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| |||| |||||||||||| |||| || || || | |||| ||||| || || || Sbjct 1060 CCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGAC-AGAAGGGCACGGTGGGCATCAT 1002 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||||| ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 1001 GTACCGCCAAGAGGACATGCCCTTCAACATCGAG-GGCATCACCCCCGACATCATCGTCA 943 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCATT 21898 |||| || ||| |||||| | ||||||||| Sbjct 942 ACCCGCACGCCATCCCCTCCCGTATGACCATT 911 >seq634 Length=29013 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| |||| |||||||||||| |||| || || || | |||| ||||| || || || Sbjct 27203 CCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGAC-AGAAGGGCACGGTGGGCATCAT 27261 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||||| ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 27262 GTACCGCCAAGAGGACATGCCCTTCAACATCGAG-GGCATCACCCCCGACATCATCGTCA 27320 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCATT 21898 |||| || ||| |||||| | ||||||||| Sbjct 27321 ACCCGCACGCCATCCCCTCCCGTATGACCATT 27352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521475562945240