Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq971 109 1e-18 seq412 109 1e-18 seq5693 102 2e-16 >seq971 Length=11586 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | | ||| Sbjct 8266 CGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCG 8207 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || ||||| || || ||||| Sbjct 8206 TCCTCGAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 8147 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||| || || || ||||| ||||| | | || || || | || ||| Sbjct 8146 TCCTGGATCTTTTGCTTCACGTTCTCAATAGTATCGCTGGACTCGACCTCGAGCGTAATC 8087 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| |||||| || || |||||||| Sbjct 8086 GTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 8052 >seq412 Length=117542 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| ||||| || || ||||| || || || |||| || | | || Sbjct 113638 ACGGAGAACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCC 113697 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || || ||||| || || ||||| Sbjct 113698 GTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTT 113757 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || || ||||| ||||| ||||| || || ||||| | | || || || | || | Sbjct 113758 GTCCTGGATCTTCTGCTTG-ACATTCTCGATGGTATCGCTGGACTCGACCTCGAGCGTGA 113816 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| ||||| || || |||||||| Sbjct 113817 TCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 113853 >seq5693 Length=7660 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | ||| ||||| || || ||||| || || || || | Sbjct 3248 TACCACCGCGCAGGCGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 3189 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||||||||| || | || || || || | Sbjct 3188 CCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGG 3129 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || |||||| || || || || || ||||| | | || | Sbjct 3128 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGACTCGA 3069 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| |||| |||||| || || |||||||| Sbjct 3068 CCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981692056701877