Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3696 113 4e-20 seq412 109 5e-19 seq2145 107 2e-18 seq1020 105 6e-18 seq971 105 6e-18 seq1262 102 7e-17 seq128 95.1 1e-14 seq404 89.7 4e-13 seq179 87.8 2e-12 >seq3696 Length=15212 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| || |||| |||| ||| Sbjct 11161 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTCG 11102 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| ||||||| ||||| || || || || | ||||| || || | Sbjct 11101 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 11042 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | |||| | | || | ||||| | | ||||| || || || |||| ||| Sbjct 11041 ATCTTTTGCTTCACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGCGTAATAGTCTTG 10982 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||||| || || || ||||| |||||| Sbjct 10981 CCCGTCAGCGTCTTGACGAAGATCTGCATA 10952 >seq412 Length=117542 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || |||| |||||||| || ||| Sbjct 114113 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCG 114172 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 114173 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 114232 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| |||||||| Sbjct 114233 ACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCAGTCAGAGTC 114292 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 114293 TTGACGAAGATCTGCATA 114310 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || |||||||| Sbjct 114311 CCGCCACGCAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 114370 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || |||||| | ||||||||||| || ||||| || Sbjct 114371 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 114430 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||| | |||| | | || | ||||| | || || || Sbjct 114431 ATTCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACC 114490 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || || ||||| ||||| ||||| Sbjct 114491 TCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 114537 >seq2145 Length=7803 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| || | | || |||| ||| Sbjct 2405 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCG 2346 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | ||||||||||| || ||||| || | ||||| || || | Sbjct 2345 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 2286 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | |||| | | || | ||| || ||| || || || || || |||| ||| Sbjct 2285 ATCTTCTGCTTCACGTTCTCAATAGTATCGCTGGACTCGACCTCGAGCGTAATAGTCTTG 2226 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || || ||||| ||||| Sbjct 2225 CCAGTCAGCGTCTTGACGAAGATCTGCAT 2197 >seq1020 Length=19758 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | | || |||| |||||||| || || Sbjct 16327 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCA 16268 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 16267 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 16208 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| |||||||| Sbjct 16207 ACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 16148 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 16147 TTGACGAAGATCTGCATA 16130 >seq971 Length=11586 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || |||| |||| || ||||| || ||| Sbjct 8020 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTCAAGCTGCTTGCCG 7961 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | |||||| || || |||||| | ||| Sbjct 7960 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 7901 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || ||| || || || || || |||| ||||| ||||| || Sbjct 7900 ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTC 7841 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 7840 TTGACGAAGATCTGCATA 7823 >seq1262 Length=10342 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 3142 GCCGCCGCGCAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGC 3083 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || |||| || ||||| || |||||| | ||||| ||||| || ||||| || Sbjct 3082 CAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 3023 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | |||| | | || | ||||| | | || || Sbjct 3022 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGACGACTCGAC 2963 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| |||| || ||||||| || || || |||||||||||| Sbjct 2962 CTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCATA 2914 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | | || | || |||||||| || ||| Sbjct 2883 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 2824 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | || Sbjct 2823 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTG 2764 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || || || || || || | ||||| || || || Sbjct 2763 ACGTTCTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 2704 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 2703 TTGACGAAGATTTGCAT 2687 >seq128 Length=72164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | | || | || |||||||| || ||| Sbjct 5208 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 5149 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 5148 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 5089 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| || || || Sbjct 5088 ACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTC 5029 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 5028 TTCACGAAGATCTGCAT 5012 >seq404 Length=26703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | | || |||| |||||||| || ||| Sbjct 18448 GTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 18389 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | || Sbjct 18388 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG 18329 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || || || || || || | ||||| || || || Sbjct 18328 ACGTTCTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 18269 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 18268 TTGACGAAGATTTGCAT 18252 >seq179 Length=82183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | | || | || |||||||| || ||| Sbjct 50529 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 50588 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | || Sbjct 50589 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTA 50648 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| |||||||| Sbjct 50649 ACGTTCTCGATCGTGTCGCTCGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 50708 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 50709 TTGACGAAGATCTGCATA 50726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424878763206216