Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq6640 111 5e-19 seq803 111 5e-19 seq79 102 3e-16 seq3619 100 9e-16 >seq6640 Length=3469 Score = 111 bits (122), Expect = 5e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| |||||| || ||| || || | |||||| || | || || |||| ||| Sbjct 2141 CTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCT-CTT 2199 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||| | || ||||| || || |||| |||||| |||| || |||| Sbjct 2200 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2259 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | || ||||| || ||||||||| |||| |||||||| || || || |||||| Sbjct 2260 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTAC 2312 >seq803 Length=10940 Score = 111 bits (122), Expect = 5e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| |||||| || ||| || || | |||||| || | || || |||| ||| Sbjct 2147 CTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCT-CTT 2205 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||| | || ||||| || || |||| |||||| |||| || |||| Sbjct 2206 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2265 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | || ||||| || ||||||||| |||| |||||||| || || || |||||| Sbjct 2266 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTAC 2318 >seq79 Length=69635 Score = 102 bits (112), Expect = 3e-16 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||| || Sbjct 67326 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTACTACCTGCGCACCCGGCCG 67385 Query 256595 GCGGCCGACCCGATCCAATTCACCGTAGCGCCAGA-GTGCTCGTCTCG 256641 || ||| || ||||||| ||||| || | || || |||| |||| || Sbjct 67386 GCCGCCAACGCGATCCAGTTCACGGTCGAGCAGGAGGTGCCCGTCGCG 67433 Score = 87.8 bits (96), Expect = 6e-12 Identities = 348/538 (65%), Gaps = 20/538 (4%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || | |||| || || ||||||||||| || || |||||||| ||| Sbjct 65979 CCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGC 66038 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACA--TTGAACGGTTTTTAC 255098 || || || |||||||||| ||||||||||||||||||| || || ||||| Sbjct 66039 AAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTTGAC--TTTTTGG 66096 Query 255099 TGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 ||| | | |||| ||||| |||||| ||| |||||| ||| | || Sbjct 66097 AGCT---CAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCC 66153 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTCATGT 255215 | ||| | ||| || || ||| ||||| || | || |||| ||| | | Sbjct 66154 TGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCT 66213 Query 255216 GTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATC 255275 | |||||| ||||||| || | ||||| ||||| | |||||||| | |||| Sbjct 66214 GCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTTGAGGAGAAGTATG 66273 Query 255276 TGGAGTACGAGCGTGCCGGCCGGTTCGTACGCCAAGTGCCC---GCGAAGAAGATCTGGA 255332 | ||||||| | ||||| || |||| ||| | || || || | ||| Sbjct 66274 AGCGCTACGAGCTGGAGGGCCG---CGCCCGCCGGGTGGTCAAGGCCCAGGAGCTTTGGT 66330 Query 255333 ACACGATGGTGCGCAT-GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGACCAC 255391 |||| | || | |||| | || || || | ||| | | | | |||| ||| | Sbjct 66331 TTGCGATCCT-CGAGTCGCAGATCGAGACTGGCACGCCCTACATGCTCTACAAGGACGCC 66389 Query 255392 ATAAAC-GCACGGTCGAACCAACGCCACCGCGGTACGATACGCGGCTCGAACCTGTGCAC 255450 ||| ||| ||||||||| | |||| || ||||| | ||||||||||| || Sbjct 66390 TGCAACAGCA-AGTCGAACCAGCAGCACCTGGGCACGATCCAGTCGTCGAACCTGTGTAC 66448 Query 255451 CGAGATTACGTTGCACACGTCAGCGCAAGAGGTGGCCGTTTGCAACTTGGCGTCCATC 255508 ||| | | | |||| || | | || |||||||| |||||| |||| || ||| Sbjct 66449 GGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGATC 66506 >seq3619 Length=11060 Score = 100 bits (110), Expect = 9e-16 Identities = 86/105 (82%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||| || Sbjct 8822 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTACTACCTGCGCACCCGGCCG 8881 Query 256595 GCGGCCGACCCGATCCAATTCACCGTAGCGCCAGA-GTGCTCGTC 256638 || ||| || ||||||| ||||| || | || || |||| |||| Sbjct 8882 GCCGCCAACGCGATCCAGTTCACGGTCGAGCAGGAGGTGCCCGTC 8926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588117373987635