Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq79 212 8e-50 seq3619 197 2e-45 seq6640 86.0 8e-12 seq803 86.0 8e-12 >seq79 Length=69635 Score = 212 bits (234), Expect = 8e-50 Identities = 577/873 (66%), Gaps = 23/873 (3%) Strand=Plus/Minus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 66519 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 66460 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | || ||||| | ||| || || ||||| |||| | || ||||| || Sbjct 66459 GGATGACCTCCGTACACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 66400 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | ||||||| || ||||||||||||||||||||||| || ||||| |||| || | || Sbjct 66399 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 66340 Query 111405 GAATAGCCTTCCAAACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 111462 | || || ||||| || ||| || | |||| ||| || |||||| ||| Sbjct 66339 GGATCGCAAACCAAAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 66282 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| || | |||||||||| ||| || ||| | || || || |||| Sbjct 66281 GTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 66222 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 66221 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 66162 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 66161 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 66103 Query 111643 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | ||| | || || | ||| || |||||||| ||||| || |||| || | | | Sbjct 66102 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGC 66043 Query 111702 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 66042 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCA 65983 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 111816 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 65982 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 65925 Query 111817 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 65924 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 65870 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 65869 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 65810 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | |||||| | || || || || ||||||||||| ||||| ||||| |||| Sbjct 65809 GACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGTGTGGCGTGGGTGAAG 65750 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 65749 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 65690 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||| || || ||||||| ||||| ||| ||| Sbjct 65689 CCGACGGCAACACGCATGAGCATGTGCTGGGGG 65657 >seq3619 Length=11060 Score = 197 bits (218), Expect = 2e-45 Identities = 574/873 (66%), Gaps = 23/873 (3%) Strand=Plus/Minus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 8015 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 7956 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | || || || | ||| || || ||||| |||| | || ||||| || Sbjct 7955 GGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 7896 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | ||||||| || ||||||||||||||||||||||| || ||||| |||| || | || Sbjct 7895 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 7836 Query 111405 GAATAGCCTTCCAAACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 111462 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 7835 GGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 7778 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| || | |||||||||| ||| || ||| | || || || |||| Sbjct 7777 GTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 7718 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 7717 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 7658 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 7657 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 7599 Query 111643 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | ||| | || || | ||| || |||||||| ||||| ||||||| || | | | Sbjct 7598 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGC 7539 Query 111702 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 7538 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCA 7479 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 111816 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 7478 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 7421 Query 111817 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 7420 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 7366 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 7365 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 7306 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | ||| || | || || || || ||||||||||| || || ||||| |||| Sbjct 7305 GACGAAAGCTGTGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAG 7246 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 7245 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 7186 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||| || || ||||||| ||||| ||| ||| Sbjct 7185 CCGACGGCAACACGCATGAGCATGTGCTGGGGG 7153 >seq6640 Length=3469 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || ||| ||||| || || |||| ||||| Sbjct 2299 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2240 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 2239 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2180 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCAT-CAA 122836 ||||| || || || | | || || |||| ||||| ||| || | | | ||| Sbjct 2179 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAA 2120 Query 122837 A-CCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | ||| ||| ||||| | |||||||||| Sbjct 2119 ATCCAGCGCATGGCCCACTCGGCCTTCTTCT 2089 >seq803 Length=10940 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || ||| ||||| || || |||| ||||| Sbjct 2305 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 2246 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 2245 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 2186 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCAT-CAA 122836 ||||| || || || | | || || |||| ||||| ||| || | | | ||| Sbjct 2185 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAA 2126 Query 122837 A-CCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | ||| ||| ||||| | |||||||||| Sbjct 2125 ATCCAGCGCATGGCCCACTCGGCCTTCTTCT 2095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627947663152800