Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq79 167 3e-36 seq3619 165 9e-36 seq6640 104 3e-17 seq803 104 3e-17 >seq79 Length=69635 Score = 167 bits (184), Expect = 3e-36 Identities = 571/877 (65%), Gaps = 31/877 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| ||||| |||| ||| |||| | || Sbjct 65657 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 65716 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| |||||| | | || ||| | |||| ||||| ||||| |||||||| Sbjct 65717 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCCACCCTCTT 65776 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || | || |||||||| || ||| |||||||| Sbjct 65777 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 65836 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 65837 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 65896 Query 104461 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 104513 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 65897 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 65949 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 65950 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 66009 Query 104574 GCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| || | || | | ||| || ||||| | | || |||| || ||||| | Sbjct 66010 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGT 66069 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GC 104688 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 66070 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 66129 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 66130 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 66187 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | | ||| | ||||| ||||| || || || |||| || || || | || | Sbjct 66188 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 66247 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866 ||| |||||||||| | || |||||| || || | ||| | || | Sbjct 66248 GGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCC--GCGCCCGCCGG 66305 Query 104867 ACGGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| | || ||| || | ||| || || ||| |||| || | ||||||||| Sbjct 66306 GTGGT-CAAG--GCCCAGGAGCTTTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGC 66362 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 104983 || || |||||||| ||||| |||||||| ||| ||| || || || | |||| Sbjct 66363 ACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGC 66422 Query 104984 GTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 |||| || || || || ||||| || || | | | || || || | Sbjct 66423 ACGATCCAGTCGTCGAACCTGTGTACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTG 66482 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT 105080 || ||||| ||||| || || ||||| || ||||||| Sbjct 66483 GCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAAGT 66519 >seq3619 Length=11060 Score = 165 bits (182), Expect = 9e-36 Identities = 496/753 (66%), Gaps = 31/753 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| ||||| |||| ||| |||| | || Sbjct 7153 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 7212 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| |||||| | | || ||| | |||| ||||| || || |||||||| Sbjct 7213 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACGCCCACCCTCTT 7272 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || | || |||||||| || ||| |||||||| Sbjct 7273 CAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 7332 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 7333 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 7392 Query 104461 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 104513 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 7393 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 7445 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 7446 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 7505 Query 104574 GCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| || | || | | ||| || ||||| | | || ||||||| ||||| | Sbjct 7506 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 7565 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GC 104688 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 7566 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 7625 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 7626 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 7683 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | | ||| | ||||| ||||| || || || |||| || || || | || | Sbjct 7684 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 7743 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866 ||| |||||||||| | || |||||| || || | ||| | || | Sbjct 7744 GGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCC--GCGCCCGCCGG 7801 Query 104867 ACGGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| | || ||| || | ||| || || ||| |||| || | ||||||||| Sbjct 7802 GTGGT-CAAG--GCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGC 7858 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 || || |||||||| ||||| |||||||| ||| Sbjct 7859 ACGCCCTACATGCTCTACAAGGACGCCTGCAAC 7891 >seq6640 Length=3469 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 2140 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2199 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 2200 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2259 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| || ||| || ||||| Sbjct 2260 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2299 >seq803 Length=10940 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 2146 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 2205 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 2206 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 2265 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| || ||| || ||||| Sbjct 2266 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 2305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583182475365320