Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5693 96.9 1e-14 seq2180 87.8 5e-12 seq1844 87.8 5e-12 seq66 86.0 2e-11 seq4281 84.2 7e-11 seq705 84.2 7e-11 >seq5693 Length=7660 Score = 96.9 bits (106), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| || ||||| ||||| || || || || || || Sbjct 3250 CATACCACCGCGCAGGCGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 3191 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||||||||| || || ||||| || || Sbjct 3190 GGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGG 3131 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 || || || || || ||||| || ||| || || || || || || | ||| | | Sbjct 3130 GGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTATCGCTCGACT 3072 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || |||| ||||| || || || || || || || |||||||| Sbjct 3071 CGACCTCGAGCGTAATAGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3020 >seq2180 Length=7228 Score = 87.8 bits (96), Expect = 5e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 74473 AAAATATTGTATGGAGTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCT 74532 ||||||||| | ||||||| |||||||||||| || || | ||| ||||||||||||| Sbjct 3632 AAAATATTGGACAGAGTGGGGTTCGAACCCACGCGTGTTTCCACACCAGAACTTGAGTCT 3691 Query 74533 ACCCCCTTAGACC-ACTCGGGCATC 74556 |||||| |||| ||||||||||| Sbjct 3692 GGCCCCTTGGACCAACTCGGGCATC 3716 >seq1844 Length=9491 Score = 87.8 bits (96), Expect = 5e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 74473 AAAATATTGTATGGAGTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCT 74532 ||||||||| | ||||||| |||||||||||| || || | ||| ||||||||||||| Sbjct 4975 AAAATATTGGACAGAGTGGGGTTCGAACCCACGCGTGTTTCCACACCAGAACTTGAGTCT 4916 Query 74533 ACCCCCTTAGACC-ACTCGGGCATC 74556 |||||| |||| ||||||||||| Sbjct 4915 GGCCCCTTGGACCAACTCGGGCATC 4891 >seq66 Length=96858 Score = 86.0 bits (94), Expect = 2e-11 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 6409 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 6350 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATTATAT 423857 ||||||||| ||||||||||| ||| || || ||| Sbjct 6349 CGTGGGTTCGAACCCCACTCCAGGCAATTTTTCTAT 6314 >seq4281 Length=5458 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 2281 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 2222 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||| ||||||||||| ||| || || Sbjct 2221 CGTGGGTTCGAACCCCACTCCAGGCAATTTTT 2190 >seq705 Length=23835 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || |||||||||||||| || || || || || || | |||||||||||| | ||| Sbjct 129 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAATGTTCGCCCAACCTCA 188 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || |||||||| || |||||||| || | || | ||| || |||| Sbjct 189 AGCTGCTTCCCGGCAAAGATAAGGCGTTGCTGGTCTGCGGGCACTCCAACTATATC 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515045833281629