Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq5531 87.8 2e-12 seq229 84.2 3e-11 >seq5531 Length=4343 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/126 (77%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 184601 GTTCAGCAGGAGCACCCCCTGGCGCGCCCAGCTGTCGAGGTGGCCGTGGTTGGGCGTCCG 184660 ||| |||| |||||| |||||||||||||| ||||||| |||||| ||||||| | Sbjct 284 GTTGAGCATGAGCACGCCCTGGCGCGCCCACTCCTCGAGGTAGCCGTGCTTGGGCGGCAC 225 Query 184661 GAACCCCTCGATGGAGCGT--TGCAGCTCCCTGTAGATGTTGCGCAGCGACGGCGCCACG 184718 ||| |||||||| | ||| || |||||| |||||||||| ||||| |||| | | Sbjct 224 GAAGCCCTCGAT-GTCCGTACTG-AGCTCCTTGTAGATGTTCTTGAGCGAGGGCGGAAGG 167 Query 184719 GCCCCG 184724 ||| || Sbjct 166 GCCACG 161 >seq229 Length=35504 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 184601 GTTCAGCAGGAGCACCCCCTGGCGCGCCCAGCTGTCGAGGTGGCCGTGGTTGGGCGTCCG 184660 ||| |||| |||||| |||||||||||||| ||||||| |||||| ||||||| | Sbjct 35196 GTTGAGCATGAGCACGCCCTGGCGCGCCCACTCCTCGAGGTAGCCGTGCTTGGGCGGCAC 35255 Query 184661 GAACCCCTCGATG-GAGCGTTGCAGCTCCCTGTAGATGTTGCGCAGCGACGGCGCCACGG 184719 ||| ||||||||| | || |||||| |||||||||| ||||| |||| | || Sbjct 35256 GAAGCCCTCGATGTCTGTACTG-AGCTCCTTGTAGATGTTCTTGAGCGAGGGCGGAAGGG 35314 Query 184720 CCCCG 184724 || || Sbjct 35315 CCACG 35319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658650739559680