Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3338 95.1 1e-14 seq124 86.0 5e-12 >seq3338 Length=16605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/144 (77%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 53530 GATGGGCGACAAGTTTGCATC-CTTCACGGCGCAAAAGGG-GACATG-CGGAGCGGTCCT 53586 ||| |||||||||||||| || | |||||| |||||||| | |||| || ||| || Sbjct 355 GATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCAGCTGTG-- 411 Query 53587 GACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 53646 | |||||||| ||||||||||| | || || || ||||||| ||||||||||||| Sbjct 412 GCCTCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCAACCC 471 Query 53647 CCACGCCTTTCCCTCCAGGATGAC 53670 |||||||| || || | ||||| Sbjct 472 GCACGCCTTCCCGTCGCGCATGAC 495 >seq124 Length=48725 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/144 (76%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 53530 GATGGGCGACAAGTTTGCATC-CTTCACGGCGCAAAAGGG-GACATG-CGGAGCGGTCCT 53586 ||| |||||||||||||| || | |||||| |||||||| | |||| || ||| | Sbjct 1567 GATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCAGCTATG-- 1623 Query 53587 GACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCC 53646 | | |||||| ||||||||||| | || || || ||||||| ||||||||||||| Sbjct 1624 GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCAACCC 1683 Query 53647 CCACGCCTTTCCCTCCAGGATGAC 53670 |||||||| || || | ||||| Sbjct 1684 GCACGCCTTCCCGTCGCGCATGAC 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406110020925298