Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq50985 129 6e-25 seq50789 129 6e-25 seq50610 129 6e-25 seq50609 129 6e-25 >seq50985 Length=2480 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 802 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 743 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 742 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 683 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 682 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCC 623 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 622 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 566 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || |||||||| || Sbjct 565 ATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGC 506 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 505 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 446 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 445 TCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 386 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || |||| | ||||| ||||| | | |||| || ||| || || Sbjct 385 CTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 328 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 327 ACTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 268 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 267 CGGCCTTCTTGTACATCTCCCAGAT 243 >seq50789 Length=2477 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 1676 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 1735 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 1736 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 1795 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 1796 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCC 1855 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 1856 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 1912 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || |||||||| || Sbjct 1913 ATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGC 1972 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 1973 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 2032 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 2033 TCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 2092 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || |||| | ||||| ||||| | | |||| || ||| || || Sbjct 2093 CTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 2150 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 2151 ACTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 2210 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 2211 CGGCCTTCTTGTACATCTCCCAGAT 2235 >seq50610 Length=4059 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 3711 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 3652 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 3651 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 3592 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 3591 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCC 3532 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 3531 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 3475 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || |||||||| || Sbjct 3474 ATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGC 3415 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 3414 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 3355 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 3354 TCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 3295 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || |||| | ||||| ||||| | | |||| || ||| || || Sbjct 3294 CTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 3237 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 3236 ACTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 3177 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 3176 CGGCCTTCTTGTACATCTCCCAGAT 3152 >seq50609 Length=4102 Score = 129 bits (142), Expect = 6e-25 Identities = 370/565 (65%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | ||||| || | |||||| | |||||| || | Sbjct 3754 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCG 3695 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || | | ||| || || ||| Sbjct 3694 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAG 3635 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG------TCT 17134 || || |||||||||| || || ||| | || |||||| | ||| || || Sbjct 3634 AAGATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCC 3575 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 ||||| ||||| ||| | |||| ||||| || | ||| | | || || || Sbjct 3574 TTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCG 3518 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| || | || || || ||| | | || || |||||||| || Sbjct 3517 ATGGCGCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGC 3458 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 |||||| |||||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 3457 GAGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCC 3398 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | || || ||| ||| || | || ||||| ||| ||||||||||||| Sbjct 3397 TCGGGCACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCG 3338 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || ||||| || |||| | ||||| ||||| | | |||| || ||| || || Sbjct 3337 CTAGCCGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGT-TGAGCG 3280 Query 17435 --CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCA 17492 ||||| ||| | || | | ||| ||||| |||| ||||| || ||| Sbjct 3279 ACTCCCAGTGCTTCATGTCGGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCT 3220 Query 17493 CTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 3219 CGGCCTTCTTGTACATCTCCCAGAT 3195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517109186142120