Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq51115 82.4 9e-11 seq45821 82.4 9e-11 seq33978 82.4 9e-11 >seq51115 Length=1273 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 304 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 363 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| | |||||||| ||| Sbjct 364 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCAGTGGAGGGCCGATCGCG 421 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 422 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 481 Query 151191 C 151191 | Sbjct 482 C 482 >seq45821 Length=1542 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 1239 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 1180 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| | |||||||| ||| Sbjct 1179 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCAGTGGAGGGCCGATCGCG 1122 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 1121 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 1062 Query 151191 C 151191 | Sbjct 1061 C 1061 >seq33978 Length=1172 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 151013 TCTTCATGGGCCCCATCTACTACCTGCGGCTGCGGCACCTCACGCAGGACAAGG-CCACG 151071 ||||||| || |||| |||||||| | ||||| |||| | | | |||||| |||| Sbjct 639 TCTTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACT 698 Query 151072 -GTGCGCTGCCGCGGCAAGAAGACCAAGCTGATCCGGCAGGCCAACGAGGGCCGCAAGCG 151130 | ||||| |||||| | | | || | ||||| | |||||||| ||| Sbjct 699 CGCGCGCT--CGCGGCCCGGTGCAGATTCTCACGAGGCAGCCAGTGGAGGGCCGATCGCG 756 Query 151131 AGGCGGCGGCATCAAGTTCGGCGAGATGGAGCGCGACTGCCTCATCGCGCACGGCGCGGC 151190 | ||| || ||| |||||| |||||||||||||||||| | ||| | ||||||||||| Sbjct 757 CGACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGC 816 Query 151191 C 151191 | Sbjct 817 C 817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608283439708360