Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq58068 123 5e-23 seq54405 123 5e-23 seq54404 123 5e-23 >seq58068 Length=5899 Score = 123 bits (136), Expect = 5e-23 Identities = 313/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Minus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 4943 CGCAAGGGTGCTTTCGCCATCTACCTTGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4884 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 4883 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4824 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | ||||| |||||||| ||||| || | | |||||| ||| |||| ||| Sbjct 4823 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACTGGCGGCGACTGGTCGCTCTTTTGC 4764 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| |||| || | || || || ||||| | || Sbjct 4763 CCCAACGAGGCCCCCGGCCTGTTCGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 4706 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 4705 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 4646 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 4645 CCA---TCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCT 4589 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 4588 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 4529 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 4528 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 4480 >seq54405 Length=5848 Score = 123 bits (136), Expect = 5e-23 Identities = 313/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 4325 CGCAAGGGTGCTTTCGCCATCTACCTTGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4384 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 4385 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4444 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | ||||| |||||||| ||||| || | | |||||| ||| |||| ||| Sbjct 4445 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACTGGCGGCGACTGGTCGCTCTTTTGC 4504 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| |||| || | || || || ||||| | || Sbjct 4505 CCCAACGAGGCCCCCGGCCTGTTCGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 4562 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 4563 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 4622 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 4623 CCA---TCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCT 4679 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 4680 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 4739 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 4740 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 4788 >seq54404 Length=5758 Score = 123 bits (136), Expect = 5e-23 Identities = 313/469 (67%), Gaps = 13/469 (3%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| | |||||||| || | || |||||||| || || || || ||||| Sbjct 4235 CGCAAGGGTGCTTTCGCCATCTACCTTGAGCCCTGGCACGCGGACATCTTTGACTTCCTC 4294 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| |||| |||||| ||||||| ||| | | || || || ||||||||||||||| Sbjct 4295 GACCTGAAGAAGAACCACGGCAAGGAGGAGAACCGCGCCCGCGATCTCTTCTACGGCCTG 4354 Query 249385 TGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCT 249444 ||| | ||||| |||||||| ||||| || | | |||||| ||| |||| ||| Sbjct 4355 TGGATTCCCGACCTGTTCATGAAGCGCGTGGAGACTGGCGGCGACTGGTCGCTCTTTTGC 4414 Query 249445 CCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGACTTCGACCAAGCCTATA 249502 || ||| ||||| | ||| |||| || | || || || ||||| | || Sbjct 4415 CCCAACGAGGCCCCCGGCCTGTTCGA-CT-CGTGGGGCAAGGAGTTCGAGGAGAAGTACG 4472 Query 249503 AGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCTC-GGACCCTT--TTTG 249556 || ||||| | ||| || || ||||||| | ||| | | || | Sbjct 4473 AGCGCTACGAGCAGGAGGGCCGCGCGCGCCGCGTGGTCAAGGCCCAGGAGCTGTGGTTCG 4532 Query 249557 CGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGT 249616 | | | | ||||| ||||| ||||| || ||| || ||| ||| ||||| | Sbjct 4533 CCA---TCCTCGAGTCGCAGATCGAGACCGGCACGCCCTACATGCTGTACAAGGACGCCT 4589 Query 249617 GCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAG 249676 |||||| |||| ||||| | ||| || || ||||||| ||||| || || || | | Sbjct 4590 GCAACGGCAAGTCCAACCAGCAGCACCTCGGCACCATCCAGTCGTCGAACCTGTGCACGG 4649 Query 249677 AGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| | || ||| |||| || ||| | ||||| ||||||||||| Sbjct 4650 AGGTCGTCCAGTACACGTCGCCCGACGAGGTGGCCGTGTGCAACCTGGC 4698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072838323902912