Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq64025 84.2 2e-11 >seq64025 Length=5555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || || |||||||||||||| | ||| | || Sbjct 1500 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCC 1559 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || |||||||| |||| || | || ||||| ||| | ||| ||||| || Sbjct 1560 TCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 1619 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| || | | | ||||| | || |||| || | ||| ||| | Sbjct 1620 TGGATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTAATGGTC 1679 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||||| || || || || ||||||||| || Sbjct 1680 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTGTT 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379032119840955