Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq61102 89.7 8e-13 seq60283 89.7 8e-13 seq59454 89.7 8e-13 >seq61102 Length=3314 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 1120 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 1061 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 1060 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 1001 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 1000 CGATGGCGCCCTTGTAG 984 >seq60283 Length=4224 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 3105 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 3164 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 3165 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 3224 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 3225 CGATGGCGCCCTTGTAG 3241 >seq59454 Length=9412 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77351 CGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAGA 77410 ||||||| | || || ||||||||||| ||||||||||| || |||||||||||||| | Sbjct 7711 CGCCGGGAGCGAGAAGCGTGGAGTAGCAGAGGTTGTGGGCAATCATGATGGAGGGGTACA 7652 Query 77411 GGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTAGCCCACCACGGGCTCGAAGA 77470 | |||||| |||| | || | ||| ||| ||||||| || | ||| | | | Sbjct 7651 GCGAGGCGAAATCGAGGGTGGCGATGGGCACGTCGTAGTAGGCCGTCTTGGGGGCAATCA 7592 Query 77471 CGGTGGCACCCTGGTAG 77487 || |||| |||| |||| Sbjct 7591 CGATGGCGCCCTTGTAG 7575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770699968417080