Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq50985 132 7e-26 seq50789 132 7e-26 seq50610 132 7e-26 seq50609 132 7e-26 >seq50985 Length=2480 Score = 132 bits (146), Expect = 7e-26 Identities = 390/592 (66%), Gaps = 12/592 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 799 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 740 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 681 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| || | || || | ||| | | | || | | | Sbjct 680 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 621 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 620 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 561 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 560 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 501 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 500 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 441 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 440 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 381 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 380 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGACTCCC 322 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 321 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 263 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 262 TTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 211 >seq50789 Length=2477 Score = 132 bits (146), Expect = 7e-26 Identities = 390/592 (66%), Gaps = 12/592 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 1679 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1738 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 1739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1797 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| || | || || | ||| | | | || | | | Sbjct 1798 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 1857 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1858 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1917 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 1918 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1977 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1978 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2037 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 2038 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2097 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 2098 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGACTCCC 2156 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 2157 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2215 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 2216 TTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 2267 >seq50610 Length=4059 Score = 132 bits (146), Expect = 7e-26 Identities = 390/592 (66%), Gaps = 12/592 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3708 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3649 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 3648 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3590 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| || | || || | ||| | | | || | | | Sbjct 3589 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 3530 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3529 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3470 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 3469 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 3410 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3409 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3350 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 3349 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 3290 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 3289 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGACTCCC 3231 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 3230 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3172 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 3171 TTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 3120 >seq50609 Length=4102 Score = 132 bits (146), Expect = 7e-26 Identities = 390/592 (66%), Gaps = 12/592 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3751 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3692 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| | | || || ||||| Sbjct 3691 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3633 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| || | || || | ||| | | | || | | | Sbjct 3632 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 3573 Query 50135 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3572 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3513 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| || || || || || || || || ||||| | || || Sbjct 3512 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 3453 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3452 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3393 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | || || | || | ||| || ||| || ||||| || || Sbjct 3392 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 3333 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCC 50431 || || || |||| || || || || || || | ||| | | |||| || | || Sbjct 3332 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCG-TCGTTGTTGAGCGACTCCC 3274 Query 50432 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 | | || || || || | | ||| ||||| || | ||||| || || ||||| ||| Sbjct 3273 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3215 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 || || ||||| | ||||||| || | |||| ||||| | || |||| Sbjct 3214 TTCTTGTACATCTCCCAGATGCGCTGGTGGCGGATGGGGAACAGCACGAATC 3163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717663128812760