Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq50985 141 1e-28 seq50789 141 1e-28 seq50610 141 1e-28 seq50609 141 1e-28 >seq50985 Length=2480 Score = 141 bits (156), Expect = 1e-28 Identities = 374/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 799 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 740 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 681 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || ||| || | Sbjct 680 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 621 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 620 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 561 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 560 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 501 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 500 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 441 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||||||| || | || || | || | ||| ||| ||| || ||||| || || Sbjct 440 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 381 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCC 42536 || || || |||| || || || || || | | |||| || |||| | | | || Sbjct 380 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGACTCCC 322 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 321 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 263 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 262 TTCTTGTACATCTCCCAGAT 243 >seq50789 Length=2477 Score = 141 bits (156), Expect = 1e-28 Identities = 374/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 1679 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1738 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 1739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 1797 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || ||| || | Sbjct 1798 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 1857 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1858 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 1917 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 1918 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 1977 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1978 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 2037 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||||||| || | || || | || | ||| ||| ||| || ||||| || || Sbjct 2038 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 2097 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCC 42536 || || || |||| || || || || || | | |||| || |||| | | | || Sbjct 2098 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGACTCCC 2156 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 2157 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 2215 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 2216 TTCTTGTACATCTCCCAGAT 2235 >seq50610 Length=4059 Score = 141 bits (156), Expect = 1e-28 Identities = 374/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 3708 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3649 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 3648 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3590 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || ||| || | Sbjct 3589 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 3530 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3529 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3470 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 3469 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 3410 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3409 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3350 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||||||| || | || || | || | ||| ||| ||| || ||||| || || Sbjct 3349 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 3290 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCC 42536 || || || |||| || || || || || | | |||| || |||| | | | || Sbjct 3289 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGACTCCC 3231 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 3230 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3172 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 3171 TTCTTGTACATCTCCCAGAT 3152 >seq50609 Length=4102 Score = 141 bits (156), Expect = 1e-28 Identities = 374/560 (67%), Gaps = 12/560 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || |||||||| | || || | ||||| || | ||| Sbjct 3751 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3692 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| | | | || || ||||| Sbjct 3691 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAGCTGCCGGAGAAGAA 3633 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT- 42239 ||| || || || || || || | | || | ||| | | || ||| || | Sbjct 3632 GATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTT 3573 Query 42240 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 || |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3572 GTTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGC 3513 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 ||||| || || || || || || || || ||||| | || || Sbjct 3512 GCGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTA 3453 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGT 42417 ||| || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3452 CATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGG 3393 Query 42418 AACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGC 42477 |||||||| || | || || | || | ||| ||| ||| || ||||| || || Sbjct 3392 CACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGC 3333 Query 42478 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA-TTCC 42536 || || || |||| || || || || || | | |||| || |||| | | | || Sbjct 3332 CGCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGT-CGTTGTTGAGCGACTCCC 3274 Query 42537 AATCATTGATATCTTTAGAT-ATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 | | || || || || | | ||| ||||| || ||||||| || || || || ||| Sbjct 3273 AGTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCC 3215 Query 42596 TTTTTATACATATTCCAGAT 42615 || || ||||| | |||||| Sbjct 3214 TTCTTGTACATCTCCCAGAT 3195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670573270258840