Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq66303 107 2e-18 seq66302 107 2e-18 seq64900 107 2e-18 seq63535 107 2e-18 seq43205 91.5 1e-13 seq38151 86.0 5e-12 >seq66303 Length=5292 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 4684 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 4742 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 4743 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 4802 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 4803 GGACGTGGAAGCCGTG 4818 >seq66302 Length=7949 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 7341 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 7399 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 7400 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 7459 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 7460 GGACGTGGAAGCCGTG 7475 >seq64900 Length=2396 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 2275 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 2217 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 2216 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 2157 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 2156 GGACGTGGAAGCCGTG 2141 >seq63535 Length=2404 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 ||||||||| |||||||| ||||| ||||| | ||||||| | ||||| || | | Sbjct 2283 GACGTTGCCGAGATCGCCAACGTGACGCTCCTCATCGTCGGGTCCACCGTGCTTCTTGC- 2225 Query 21198 CGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 || |||| || ||||| |||| ||| | |||||||||| || ||||||||||||||| Sbjct 2224 CGAAGGGGTTGAAGTGGCCGCCCGCGCTCACGCAGCCGTTGGTGTTGTCGCCGAACTCGT 2165 Query 21257 GAACGTGAAAGCCGTG 21272 | ||||| |||||||| Sbjct 2164 GGACGTGGAAGCCGTG 2149 >seq43205 Length=799 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || |||| || | ||||||| ||||| || ||| Sbjct 5 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCC 64 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | ||||||||| ||| | |||||| ||||| || ||||| || Sbjct 65 GCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 124 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || |||| | ||| |||| ||| ||||| || || || | || Sbjct 125 ACGTTCTCGATCGTGTCGCTCGACTCAACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 184 Query 19025 TTGACAAAAATTTGCATTTT 19044 || || || |||||||| || Sbjct 185 TTCACGAAGATTTGCATGTT 204 >seq38151 Length=7651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| || || ||||| || |||| || | ||||||| ||||| |||||| Sbjct 279 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTACCC 220 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | |||||| ||| ||| | |||||| ||||| || ||||| || Sbjct 219 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 160 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | ||| || ||| ||| |||| ||| || || ||||| || | || Sbjct 159 ACGTTCTCGATCGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTC 100 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || || ||||| Sbjct 99 TTGACGAAGATCTGCAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414231956251846