Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq64579 107 2e-18 seq59766 96.9 3e-15 seq46022 96.9 3e-15 >seq64579 Length=1488 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 99555 CGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGG 99614 || || |||||| ||||| |||||||| ||||||| | ||||||||||| | || Sbjct 1078 CGTGGCGTTGAGGAGCAGGACGCCGCGCTGCGCCCACTCGGTGAGGCAGCCGTGGTTGGG 1137 Query 99615 CCGCGGGGTC--CCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGC 99672 |||| | | ||||||| | | || | | |||||||| |||| |||| |||| Sbjct 1138 --GCGGCGCCAGCCGGGGATGCTGCGCTCGAGCTCGGCGTAGATCTTCTTGAGGGAGGGC 1195 Query 99673 GGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGG 99732 || | || ||||| ||| |||| ||||| |||||||||||||| | | || | Sbjct 1196 GGCACCGCCACGCCCCGGGTCACCGAGAAGGAGAGGCCGTGGGCCTGGTTCTCGTTGAAG 1255 Query 99733 TAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 || |||||||| |||||||| || ||||| || Sbjct 1256 TACGGGTCCTGCCCCAGGATCACCACCTTTAC 1287 >seq59766 Length=1104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 99568 AGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTC--C 99625 ||||| |||||||| ||||||| | ||||||||||| | || |||| | | | Sbjct 1104 AGCAGGACGCCGCGCTGCGCCCACTCGGTGAGGCAGCCGTGGTTGGG--GCGGCGCCAGC 1047 Query 99626 CGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGC 99685 |||||| | | || | | |||||||| |||| |||| |||||| | || |||| Sbjct 1046 CGGGGATGCTGCGCTCGAGCTCGGCGTAGATCTTCTTGAGGGAGGGCGGCACCGCCACGC 987 Query 99686 CGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGC 99745 | ||| |||| ||||| |||||||||||||| | | || ||| |||||||| | Sbjct 986 CCCGGGTCACCGAGAAGGAGAGGCCGTGGGCCTGGTTCTCGTTGAAGTACGGGTCCTGCC 927 Query 99746 CCAGGATGACGACCTTGAC 99764 ||||||| || ||||| || Sbjct 926 CCAGGATCACCACCTTTAC 908 >seq46022 Length=1075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 99568 AGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTC--C 99625 ||||| |||||||| ||||||| | ||||||||||| | || |||| | | | Sbjct 1 AGCAGGACGCCGCGCTGCGCCCACTCGGTGAGGCAGCCGTGGTTGGG--GCGGCGCCAGC 58 Query 99626 CGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGC 99685 |||||| | | || | | |||||||| |||| |||| |||||| | || |||| Sbjct 59 CGGGGATGCTGCGCTCGAGCTCGGCGTAGATCTTCTTGAGGGAGGGCGGCACCGCCACGC 118 Query 99686 CGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGC 99745 | ||| |||| ||||| |||||||||||||| | | || ||| |||||||| | Sbjct 119 CCCGGGTCACCGAGAAGGAGAGGCCGTGGGCCTGGTTCTCGTTGAAGTACGGGTCCTGCC 178 Query 99746 CCAGGATGACGACCTTGAC 99764 ||||||| || ||||| || Sbjct 179 CCAGGATCACCACCTTTAC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440527417260840