Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq33364 118 2e-21 seq63834 116 9e-21 seq63448 116 9e-21 seq67000 114 3e-20 seq33763 111 4e-19 seq61750 107 4e-18 seq37491 107 4e-18 seq61737 104 5e-17 seq47019 104 5e-17 seq64861 100 7e-16 seq64025 98.7 2e-15 seq21179 84.2 5e-11 >seq33364 Length=844 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | ||||| | ||||| || || || || ||| Sbjct 236 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTGCGGCCGTCCTCGAGCTGCTTGCCA 295 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || || ||||| ||||| ||| || Sbjct 296 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGC-TT 354 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | || ||||| || || || ||||| || || || || Sbjct 355 CACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 414 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 415 CTTCACGAAGATCTGCATT 433 >seq63834 Length=75625 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || || || || Sbjct 68974 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCG 69033 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||| ||||| || || || || ||||||||||| ||| || Sbjct 69034 GCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 69092 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | || ||||| || ||||| |||||||| ||||| || Sbjct 69093 CACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTAATCGTCTTACCGGTAAGGGT 69152 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 69153 CTTGACGAAGATCTGCAT 69170 >seq63448 Length=5210 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || || Sbjct 3948 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTACCC 3889 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 3888 GCGAAGATGAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 3829 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | || ||||| || ||||||||||| || || || || Sbjct 3828 -ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGAGTAATAGTCTTGCCCGTGAGGGT 3770 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3769 CTTGACGAAGATCTGCAT 3752 >seq67000 Length=10850 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 1193 AAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTC 1252 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| ||||| || || || || || Sbjct 1253 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGAATACCCTCCTTGTC 1312 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | ||||||||| | || ||||| || || || || Sbjct 1313 CTGAATCTTTTGCTTGACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGT 1372 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||| || || || || || || || |||||||| ||||| Sbjct 1373 CTTGCCGGTCAGGGTCTTGACGAAGATCTGCATCGCGTGTA 1413 >seq33763 Length=823 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 196 AAGAACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 255 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || || | ||| ||||| ||||| || || || || || Sbjct 256 CTCGAGCTGCTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTC 315 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | ||| ||||| | || ||||| || || || || Sbjct 316 CTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGT 375 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||| || || || || || || || |||||||| ||||| Sbjct 376 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCATCGCGTGTA 416 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || ||||| | || || | ||||| || || || || ||||| || || || | ||| Sbjct 2 TTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGC 61 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATC 104499 ||||| || || || || || || ||||| ||||| |||||| || || || | || || Sbjct 62 TGATCGGGGGGAATACCCTCCTTGTCCTGGATCTTCTGCTTT-ACGTTCTCGATCGTGTC 120 Query 104500 GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | | || ||||| || || ||||||||||| || || || || || || |||||||| Sbjct 121 GGACGACTCGACCTCGAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 180 >seq61750 Length=9220 Score = 107 bits (118), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 3981 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTC 4040 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || ||||| || ||||| || || Sbjct 4041 CTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 4100 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||| || || || || | ||| ||||| | || ||||| || || || || Sbjct 4101 CTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGT 4160 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || || || ||||||||| Sbjct 4161 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 4194 >seq37491 Length=1671 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 407 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 466 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||||||||| || || || || |||||||||||| || Sbjct 467 GCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 526 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||||| | || ||||| || ||||| ||||| || || || || Sbjct 527 ACGTTCTCGATCGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 586 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 587 TTCACGAAGATCTGCAT 603 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| | || || | ||||| || || || || ||| Sbjct 179 GTAGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 238 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || |||||||||||| || Sbjct 239 GCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTTTGCTTC 298 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | || | || ||||| || ||||| ||||| || || || || Sbjct 299 ACGTTCTCGATTGTGTC-CGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTCAGAGT 357 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 358 CTTGACGAAGATCTGCAT 375 >seq61737 Length=2782 Score = 104 bits (114), Expect = 5e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || ||| Sbjct 2071 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 2012 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 2011 GCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 1953 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||||| | || || || || || || ||||| || || || || Sbjct 1952 GACGTTCTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATGGTCTTGCCGGTGAGGGT 1893 Query 104542 TTTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 1892 CTTCACGAAGATCTGCATT 1874 >seq47019 Length=2080 Score = 104 bits (114), Expect = 5e-17 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || ||| Sbjct 559 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 618 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| ||||||||||| || || || |||||||| ||||| ||| || Sbjct 619 GCGAAGATGAGGCGCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTCTGC-TT 677 Query 104482 TACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | || | || ||||| || ||||| ||||| || || || | Sbjct 678 CACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGG 736 Query 104541 TTTTTACAAATATCTGCATT 104560 | || || || || |||||| Sbjct 737 TCTTCACGAAGATTTGCATT 756 >seq64861 Length=3609 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 2150 AAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTC 2209 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || ||||| || || || || || || Sbjct 2210 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 2269 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| ||||| | || ||||| || || || | Sbjct 2270 CTGAATCTTCTGC-TTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTGATGG 2328 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 2329 TCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2362 >seq64025 Length=5555 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||||| ||||| | ||||| Sbjct 1043 AAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCCGTC 1102 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || || || || ||||| || || Sbjct 1103 CTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTC 1162 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 ||| ||||| ||||| || || || | || || | || | || ||||| || || ||| Sbjct 1163 CTGGATCTTCTGCTTG-ACGTTCTCGATCGTGTC-CGAGCTCTCGACCTCGAGGGTGATA 1220 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || || |||||||| Sbjct 1221 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 1255 >seq21179 Length=175 Score = 84.2 bits (92), Expect = 5e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| | || || | ||||| || || || || || ||||| || || | ||| ||| Sbjct 174 TAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGA 115 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCT 104502 ||||| || || || || || ||||||||||| ||| || || || || | || ||| Sbjct 114 TCAGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTCTCGATCGTGTCGGA 56 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 | || ||||| || || || |||||||| || || || || || || |||||| Sbjct 55 CGACTCGACCTCGAGGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150403225133972