Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq65042 82.4 5e-11 seq64744 82.4 5e-11 seq48241 82.4 5e-11 seq47014 82.4 5e-11 >seq65042 Length=10126 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 167 ACCCGGTGATCGGAGACAAGTTCGCGTCGCGGCACGG-GCAGAAGGGTGTCATGTCCCAG 225 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 226 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 283 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 284 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 315 >seq64744 Length=1613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 167 ACCCGGTGATCGGAGACAAGTTCGCGTCGCGGCACGG-GCAGAAGGGTGTCATGTCCCAG 225 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 226 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 283 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 284 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 315 >seq48241 Length=4141 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 3589 ACCCGGTGATCGGAGACAAGTTCGCGTCGCGGCACGG-GCAGAAGGGTGTCATGTCCCAG 3647 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 3648 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 3705 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 3706 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 3737 >seq47014 Length=4161 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 44397 ACCCAGAGATGGGCGACAAGTTTGCGTCGTT-CACGGCGCAAAAGGG-GACATG-CGGAG 44453 |||| | ||| || |||||||| |||||| ||||| ||| ||||| | |||| | || Sbjct 553 ACCCGGTGATCGGAGACAAGTTCGCGTCGCGGCACGG-GCAGAAGGGTGTCATGTCCCAG 495 Query 44454 CCGTCCTGACCCAGGAGGACATGCCCTTCGACAAAAACGGGGTGGTGCCCGACCTCATCA 44513 | || | | |||||| ||||||||||| | | || || ||||||| |||||| Sbjct 494 CTGTG--GCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCA 437 Query 44514 TCAACCCCCACGCCTTTCCCTCCAGGATGACC 44545 ||||||| |||||||| ||||| | |||||| Sbjct 436 TCAACCCGCACGCCTTCCCCTCGCGTATGACC 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339857953640007