Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq65042 86.0 4e-12 seq64744 86.0 4e-12 seq48241 86.0 4e-12 seq47014 86.0 4e-12 >seq65042 Length=10126 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 315 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 256 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 255 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 199 Query 71536 -AATGACGCAAACTTGTCGCCCATCTCTGGGT 71566 ||||| |||||||| || ||| | |||| Sbjct 198 CCGCGACGCGAACTTGTCTCCGATCACCGGGT 167 >seq64744 Length=1613 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 315 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 256 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 255 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 199 Query 71536 -AATGACGCAAACTTGTCGCCCATCTCTGGGT 71566 ||||| |||||||| || ||| | |||| Sbjct 198 CCGCGACGCGAACTTGTCTCCGATCACCGGGT 167 >seq48241 Length=4141 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 3737 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 3678 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 3677 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 3621 Query 71536 -AATGACGCAAACTTGTCGCCCATCTCTGGGT 71566 ||||| |||||||| || ||| | |||| Sbjct 3620 CCGCGACGCGAACTTGTCTCCGATCACCGGGT 3589 >seq47014 Length=4161 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/152 (75%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | ||||| |||||||| ||||||||||||| ||||||| || || || Sbjct 405 GGTCATACGCGAGGGGAAGGCGTGCGGGTTGATGATGACGTCGGGCGACATGCCCGACTC 464 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCG-CATGTC-CCCTTTTGCGCCGTG 71535 | ||||||||||| |||||| | | |||||| | |||| | ||||| ||| ||||| Sbjct 465 GCTGAAGGGCATGTTCTCCTGCGGC--CACAGCTGGGACATGACACCCTTCTGC-CCGTG 521 Query 71536 -AATGACGCAAACTTGTCGCCCATCTCTGGGT 71566 ||||| |||||||| || ||| | |||| Sbjct 522 CCGCGACGCGAACTTGTCTCCGATCACCGGGT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338486282296536