Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq55626 93.3 4e-14 seq67000 87.8 2e-12 seq64861 84.2 2e-11 seq63834 84.2 2e-11 seq37491 84.2 2e-11 seq51115 82.4 7e-11 seq45821 82.4 7e-11 seq33978 82.4 7e-11 >seq55626 Length=4059 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| ||||||| | | |||||||| |||||||| || || ||| Sbjct 3923 TCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGAGGAATGCCCTCCTTG 3864 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || ||| ||||||| ||| ||||| || ||| ||||| || | |||| Sbjct 3863 TCCTGGATCTTTTGCTTGACGTTCTCGATCGTGTC-GC-TGGACTCGACCTCGAGGGTGA 3806 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 3805 TGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3769 >seq67000 Length=10850 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| | ||| | ||||| ||||| Sbjct 1202 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 1261 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | |||||||| ||||||||||| || ||||| | ||| || Sbjct 1262 CTTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTT 1321 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCA 94981 | ||||||| ||| || || || ||| ||||| || | |||||||| || || Sbjct 1322 TTGCTTGACGTTCTCGATGGTATC-GC-TGGACTCGACCTCGAGGGTGATGGTCTTGCCG 1379 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||||||||| Sbjct 1380 GTCAGGGTCTTGACGAAGATCTGCAT 1405 >seq64861 Length=3609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || |||||||| | ||| || ||| | || | ||||| ||||| Sbjct 1703 GTGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTG 1762 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | ||||| || || || || ||||| ||||| | ||| || Sbjct 1763 CTTACCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGAATCTT 1822 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | ||| ||| ||| ||||||| | ||||| || | |||||||| || || || Sbjct 1823 TTGCTTCACGTTCTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGT 1882 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||| Sbjct 1883 CAGCGTCTTGACGAAGATCTGCATGC 1908 >seq63834 Length=75625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| || ||||| || | ||| || ||| || ||| | ||||| Sbjct 69189 CACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTC 69248 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | |||||||| || ||||||||||| ||||| | Sbjct 69249 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTG 69308 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTT 94975 || || ||| ||| ||| ||||| || ||| ||||| || | || || || Sbjct 69309 GATCTTCTGCTTCACGTTCTCGATGGTGTC-GC-TGGACTCGACCTCGAGAGTAATCGTC 69366 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || ||||||||||||| Sbjct 69367 TTGCCGGTCAGGGTCTTGACGAAGATCTGCATGC 69400 >seq37491 Length=1671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | |||||||||||| || | ||| || ||| || || | ||||| ||||| Sbjct 172 GTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTG 231 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | ||||| || ||||| || || || ||||| | ||| || Sbjct 232 CTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 291 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | ||| ||| ||| ||||| | | ||||| || | || ||||| || || || Sbjct 292 TTGCTTCACGTTCTCGATTGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCGGT 351 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||| Sbjct 352 CAGAGTCTTGACGAAGATCTGCAT 375 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || ||||| || | ||| || ||| || ||| | ||||| Sbjct 394 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTC 453 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | | |||||||| ||||| || || || ||||| | Sbjct 454 GAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGAGGGATGCCCTCCTTGTCCTG 513 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTT 94975 ||| ||| ||| ||| ||| ||||| || ||| ||||| || | || ||||| Sbjct 514 AATCTTTTGCTTCACGTTCTCGATCGTGTC-GC-TGGACTCGACCTCGAGGGTAATGGTC 571 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || ||||| |||||||||||| || Sbjct 572 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGTT 607 >seq51115 Length=1273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 479 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 420 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | || ||||| | || || | |||||| || ||| |||| || Sbjct 419 CGATCGGCCCTCCACTGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 361 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 360 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 324 >seq45821 Length=1542 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 1064 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 1123 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | || ||||| | || || | |||||| || ||| |||| || Sbjct 1124 CGATCGGCCCTCCACTGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 1182 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 1183 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 1219 >seq33978 Length=1172 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 68078 CGCGCCGTGGGATATCTTACACCACTGTTCCATCTCTCCGATCTTTATACCGCCGTCTCG 68137 |||||||||||| ||| | || | ||||||||||||| | | | ||| ||||| || Sbjct 814 CGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCCGAACCTGAGACCACCGTCGCG 755 Query 68138 CGATCGTCCCGCTACGGGCTGTCGAGTAAGGGCGTCCACCGGACC-CGACACGCGGCTGT 68196 |||||| ||| | || ||||| | || || | |||||| || ||| |||| || Sbjct 754 CGATCGGCCCTCCACTGGCTGCCTCGTGAGAATCTGCACCGGGCCGCGA-GCGCGCGAGT 696 Query 68197 GAATTTTGCCGGACACCATGTGTCTCAGTCTCTGGTA 68233 | || ||| || ||||||||| |||| |||||||| Sbjct 695 GGATCTTGTCGTCCACCATGTGCTTCAGCCTCTGGTA 659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447913184049240