Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq54845 120 5e-23 seq56802 116 6e-22 seq32806 102 1e-17 seq42854 93.3 7e-15 >seq54845 Length=1312 Score = 120 bits (132), Expect = 5e-23 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1148 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1207 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| |||| || | ||| ||||| Sbjct 1208 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGTGGCGTGCTCAAGGTCTTC 1267 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 1268 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 1311 >seq56802 Length=1507 Score = 116 bits (128), Expect = 6e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||| | || ||||| || ||| Sbjct 1337 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTAGGCTCGCTCGCCGCGGT 1396 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| ||||||| || | || | ||| ||||| Sbjct 1397 GGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGCGTCCTCAAGGTCTTC 1456 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGC 16617 ||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 1457 CTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGC 1500 >seq32806 Length=2212 Score = 102 bits (112), Expect = 1e-17 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | | Sbjct 5 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGT 64 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | ||| |||||||| ||| ||| |||| ||||| | ||| ||||||||||| Sbjct 65 GTGCTCAAGGTCTTCCTCGAGAACGTCATCCGCGATGCCGTGACCTACACCGAGCACGCC 124 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| ||||| ||||||| ||||||| || | || | || ||||| Sbjct 125 CGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 180 >seq42854 Length=2222 Score = 93.3 bits (102), Expect = 7e-15 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || ||||| || ||||| ||||||||| |||| || || |||| ||||||| || | Sbjct 2 CTCGCTCGCCGCGGTGGTGTCAAGCGTATCTCGGGCATGATCTACGAAGAGACCCGCGGC 61 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | ||| |||||||| ||| ||| |||| || || | ||| ||||||||||| Sbjct 62 GTCCTCAAGGTCTTCCTCGAGAACGTCATCCGCGACGCCGTGACCTACACCGAGCACGCC 121 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | ||||| ||||| ||||||| ||||||| || | || | || ||||| Sbjct 122 CGCAGGAAGACCGTCACTGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCCG 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79013521764087