Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq50985 127 3e-24 seq50789 127 3e-24 seq50610 127 3e-24 seq50609 127 3e-24 >seq50985 Length=2480 Score = 127 bits (140), Expect = 3e-24 Identities = 369/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 799 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 740 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 680 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || | | || | | Sbjct 679 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTTG 620 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 619 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 560 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 559 CGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 500 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 499 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 440 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 439 ACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 380 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 379 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCCA 321 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 320 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 262 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 261 TCTTGTACATCTCCCAGATG 242 >seq50789 Length=2477 Score = 127 bits (140), Expect = 3e-24 Identities = 369/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 1679 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 1738 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 1739 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 1798 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || | | || | | Sbjct 1799 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTTG 1858 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 1859 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 1918 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 1919 CGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 1978 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 1979 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 2038 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 2039 ACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 2098 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 2099 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCCA 2157 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 2158 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 2216 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 2217 TCTTGTACATCTCCCAGATG 2236 >seq50610 Length=4059 Score = 127 bits (140), Expect = 3e-24 Identities = 369/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3708 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3649 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 3648 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 3589 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || | | || | | Sbjct 3588 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTTG 3529 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3528 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 3469 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 3468 CGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 3409 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3408 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 3349 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 3348 ACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 3289 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 3288 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCCA 3230 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 3229 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 3171 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 3170 TCTTGTACATCTCCCAGATG 3151 >seq50609 Length=4102 Score = 127 bits (140), Expect = 3e-24 Identities = 369/560 (66%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || ||||| || | || || | ||||| || | ||| Sbjct 3751 CAGGCGAAGTCGCAGTGGAGGCCCTCATCGCGGCTGATCATCTCGTTACTGAAGGCGAGG 3692 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || |||||| Sbjct 3691 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTGCCGGAGAAGAAG 3632 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTCAT-G 33479 || || || || || || || | | || | ||| | | || | | || | | Sbjct 3631 ATGCCCTCGACGGCGGCGAATCCGACGAGACGCTCGGCGAAGGTCTCGACACCCTCCTTG 3572 Query 33480 T--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | |||||||| ||||| ||||||||||| || || | |||| || || ||||| Sbjct 3571 TTGATCCACTTCATCGCCCAGTCGGCCTTCTTCTTGACCGAGGGCACGGTCTCGATGGCG 3512 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 ||||| || || || || || || || || ||||| | || ||| Sbjct 3511 CGGAAGAGGCGGTCCTTCTCGACGGCGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAC 3452 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33657 || || || || ||||| || ||||| || ||||| |||||||| || | ||||||| Sbjct 3451 ATCTCGGAGTGGATGTTCTCGATGGCGATTTGAAAGCCGTAGAAGCAGCGCGCCTCGGGC 3392 Query 33658 ATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCT 33717 | |||||| || | || || | || | ||| || ||| || ||||| || || Sbjct 3391 ACCTGTACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGGCCACGATGCCGTCGCTAGCC 3332 Query 33718 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCA 33776 || || || |||| || || || || || | | ||||| | |||| || | ||| Sbjct 3331 GCGAAGAAGGCCAGGACGTGCTTGATGAAGTGCCTCTCGTC-GTTGTTGAGCGACTCCCA 3273 Query 33777 ATCATTGATATCTTTAGAT-ATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | || || || || | | ||| ||||| || | ||||| || || ||||| |||| Sbjct 3272 GTGCTTCATGTC-GGAGCTCAGATCGACTTCCTCGGCCGTCCAGAAGGAGGCCTCGGCCT 3214 Query 33836 TTTTATACATGTTCCAGATG 33855 | || ||||| | ||||||| Sbjct 3213 TCTTGTACATCTCCCAGATG 3194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622421907560440