Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq63834 104 2e-17 seq67000 98.7 9e-16 seq55626 93.3 4e-14 seq61737 91.5 1e-13 seq61750 87.8 2e-12 seq64861 86.0 6e-12 seq54486 86.0 6e-12 seq64025 82.4 7e-11 >seq63834 Length=75625 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || |||| ||| |||| | || || | | Sbjct 69170 ATGCAGATCTTCGTCAAGACCCTTACCGGTAAGACGATTACCCTCGAGGTCGAGTCCAGC 69111 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || || || |||||| ||||| || || || ||||||||||| Sbjct 69110 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 69051 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| |||| | | || |||||| ||| Sbjct 69050 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAAC 68991 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || ||||| Sbjct 68990 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCT 68959 >seq67000 Length=10850 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 1405 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 1346 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | ||||| ||||||||| ||||| || || || ||||||||||| Sbjct 1345 GATACCATCGAGAACGTCAAGCAAAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 1286 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || || || || ||||| || | | | | || |||||| ||| Sbjct 1285 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 1226 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || ||| |||| || || || Sbjct 1225 ATCCAGAAGGAGTCGACTCTCCACCTCGTTCT 1194 >seq55626 Length=4059 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 26761 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 ||| ||| |||||| | || || || || | || || || | |||||| |||| | Sbjct 3760 CAACCAACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTC 3819 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || || | |||||| |||||| | ||||| |||||||| ||||| || || || ||| Sbjct 3820 GAGTCCAGCGACACGATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCT 3879 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 |||||||| || | ||||| | | |||||| || || || || | | | | | | Sbjct 3880 CCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCC 3939 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || || || || |||| || ||||| Sbjct 3940 GACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCT 3980 >seq61737 Length=2782 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || || | |||||| ||||| | || || | Sbjct 1874 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAAGTCGAGTCCAG 1933 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | ||||| || |||||| ||||| || || || || || || || Sbjct 1934 CGACACCATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1993 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | | || ||||| || Sbjct 1994 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAA 2053 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| |||| || || || Sbjct 2054 CATCCAGAAGGAGTCGACTCTCCACCTCGTGCT 2086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || ||||| ||||| ||||| || || ||||| || Sbjct 2163 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 2222 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || |||||| || ||||| || | | | | | | |||||| ||| Sbjct 2223 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGACTACAAC 2282 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || || || || |||| || |||||| |||| Sbjct 2283 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGACT 2320 >seq61750 Length=9220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 26761 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||||||| |||| | || || || || | || || || | |||||| | || | | Sbjct 4199 CAAACAA--TGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCG 4142 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | || | ||||||||||||| | || || ||||||||| ||||| ||||| || |||| Sbjct 4141 AGTCCAGCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAAGGCATCCCTC 4082 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 |||| || || | ||||| | || || || || ||||| || | | | | | || Sbjct 4081 CCGACCAGCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCCG 4022 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || || || || || |||| || || || Sbjct 4021 ACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTTCT 3982 >seq64861 Length=3609 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || || | |||||| |||| | || || | | Sbjct 2362 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 2303 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || || |||||| ||||| || || || || || || || Sbjct 2302 GACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 2243 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || |||||| || ||||| || | | | || |||||| ||| Sbjct 2242 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2183 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 2182 ATCCAGAAGGAGTCGACGCTCCACCTCGTCCT 2151 >seq54486 Length=978 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 |||| | || || | ||||||||||||| | || || || ||||| ||||| |||| Sbjct 976 TCGAGGTCGAGTCCAGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAG 917 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || || |||||||| || | ||||| | || |||||| || ||||| || | | | Sbjct 916 GCATCCCGCCCGATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCA 857 Query 26932 ACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAG 26991 | | |||||| ||||| || || || || || |||| || ||||| | ||| | | Sbjct 856 CCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTTCGTG 797 Query 26992 GAGGAAA 26998 | || || Sbjct 796 GTGGCAA 790 >seq64025 Length=5555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | || || || | || ||| |||| | || || | Sbjct 1712 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAG 1653 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || || |||||||| ||||| || || || || || ||||| Sbjct 1652 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1593 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | ||||| | || ||||| || ||||| || | | | || |||||| || Sbjct 1592 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACACTCGCCGACTACAA 1533 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || | || || ||||| Sbjct 1532 CATCCAGAAGGAGTCCACCCTTCACCTCGTCCT 1500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478258773914480