Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq63834 116 3e-21 seq64025 107 2e-18 seq67000 104 2e-17 seq61750 104 2e-17 seq55626 102 7e-17 seq61737 100 2e-16 seq33763 100 2e-16 seq54486 98.7 9e-16 seq64861 95.1 1e-14 seq20806 93.3 4e-14 seq65762 87.8 2e-12 >seq63834 Length=75625 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||||||| |||| |||||| ||| | Sbjct 69170 ATGCAGATCTTCGTCAAGACCCTTACCGGTAAGACGATTACCCTCGAGGTCGAGTCCAGC 69111 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || || || |||||| ||||| || ||||| ||||||||||| Sbjct 69110 GATACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 69051 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| |||| | | | || ||| || ||| Sbjct 69050 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGACTACAAC 68991 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 68990 ATCCAGAAGGAGTCGAC 68974 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || ||||||| |||| |||||| ||| | Sbjct 69398 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCCAGC 69339 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| ||||| || || || ||||| Sbjct 69338 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 69279 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | | ||| || ||| Sbjct 69278 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAAC 69219 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 69218 ATCCAGAAGGAGTCGACTCTTCA 69196 >seq64025 Length=5555 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | |||||| |||| |||||| ||| Sbjct 1712 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAG 1653 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || |||||||| ||||| || ||||| || || ||||| Sbjct 1652 CGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGATCA 1593 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || |||||||| ||||| || | | | | || ||| || || Sbjct 1592 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACACTCGCCGACTACAA 1533 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| || || || || || |||| Sbjct 1532 CATCCAGAAGGAGTCCACCCTTCA 1509 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | | Sbjct 1483 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTCGAGTCGTCC 1424 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| |||||||| || Sbjct 1423 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 1364 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 1363 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGA 1329 >seq67000 Length=10850 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 1405 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 1346 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | ||||| ||||||||| ||||| || || || ||||||||||| Sbjct 1345 GATACCATCGAGAACGTCAAGCAAAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 1286 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| ||||| || | | | | | || ||| || ||| Sbjct 1285 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 1226 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 1225 ATCCAGAAGGAGTCGAC 1209 >seq61750 Length=9220 Score = 104 bits (114), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 23982 CCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 |||||||| |||| | || || || || | || || || | || ||| | || ||| Sbjct 4200 CCAAACAA--TGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTC 4143 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| ||| ||||||||||||| | || || ||||||||| ||||| |||||||| ||| Sbjct 4142 GAGTCCAGCGACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAAGGCATCCCT 4083 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 ||||| || ||| | || || | || || ||||| ||||| || | | | | | | | Sbjct 4082 CCCGACCAGCAGCGTCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTGGCC 4023 Query 24162 GATTATAACATTCAAAAAGAATCTAC 24187 || || ||||| || || || || || Sbjct 4022 GACTACAACATCCAGAAGGAGTCCAC 3997 >seq55626 Length=4059 Score = 102 bits (112), Expect = 7e-17 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 23983 CAAACAA-AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTC 24041 ||| ||| |||||| | || || || || | || || || | || ||| |||| ||| Sbjct 3760 CAACCAACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTC 3819 Query 24042 GAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 ||| ||| |||||| |||||| | ||||| |||||||| ||||| || ||||| ||| Sbjct 3820 GAGTCCAGCGACACGATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCT 3879 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC 24161 |||||||| ||| | || || | | ||||||||| || || || | | | | | | | Sbjct 3880 CCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCC 3939 Query 24162 GATTATAACATTCAAAAAGAATCTAC 24187 || || ||||| || || || || || Sbjct 3940 GACTACAACATCCAGAAGGAGTCCAC 3965 >seq61737 Length=2782 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || || | || ||| ||||||||||| ||| Sbjct 1874 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAAGTCGAGTCCAG 1933 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | ||||| || |||||| ||||| || ||||| || || || || Sbjct 1934 CGACACCATCGAGAACGTCAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 1993 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || |||||||| ||||| || | | | | | || || || || Sbjct 1994 GCAGCGCCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCGCTGACTACAA 2053 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 2054 CATCCAGAAGGAGTCGAC 2071 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| ||| |||| |||||| | Sbjct 2103 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACCCTCGAGGTCGAGAGCTCG 2162 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || ||||| ||||| |||||||| || ||||| || Sbjct 2163 GACACCATCGAGAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAG 2222 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| | || || | || ||||||||| ||||| || Sbjct 2223 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGA 2257 >seq33763 Length=823 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || || |||| |||||| ||| | Sbjct 408 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGC 349 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||||| ||||| || ||||| ||||||||||| Sbjct 348 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 289 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| ||||| || | | | | || ||| || ||| Sbjct 288 CAGCGCCTCATCTTCGCTGGTAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 229 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 228 ATCCAGAAGGAGTCCACCCTTCA 206 >seq54486 Length=978 Score = 98.7 bits (108), Expect = 9e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 24034 TCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 24093 |||| |||||| ||| ||||||||||||| | || || || ||||| ||||| |||| Sbjct 976 TCGAGGTCGAGTCCAGCGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAG 917 Query 24094 GCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 |||| || |||||||| ||| | || || | || ||||||||| ||||| || | | | | Sbjct 916 GCATCCCGCCCGATCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCA 857 Query 24154 ACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | ||| || ||||| || || || || || Sbjct 856 CCCTGGCCGACTACAACATCCAGAAGGAGTCCAC 823 >seq64861 Length=3609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| ||| | Sbjct 2362 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGC 2303 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || |||||| ||||| || ||||| || || || || Sbjct 2302 GACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 2243 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | || ||| || ||| Sbjct 2242 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 2183 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 2182 ATCCAGAAGGAGTCGAC 2166 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 1906 ATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCT 1847 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||||||| ||||| |||||||| || || || || Sbjct 1846 GACACCATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAAGGCATCCCCCCGGACCAG 1787 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || || ||||| ||||| || | | | | | || ||| || ||| Sbjct 1786 CAGCGCCTCATCTTCGCGGGTAAGCAGCTCGAGGACGGCCGTACCCTCGCCGACTACAAC 1727 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 1726 ATCCAAAAGGAGTCGAC 1710 >seq20806 Length=178 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| |||||| |||||| | ||||| || ||||| ||| Sbjct 17 ATCACCCTCGAGGTCGAGTCCAGCGACACGATCGAGAACGTCAAGCAGAAGATCCAGGAC 76 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || |||||||| ||||||||||| ||| | || || | | || ||||| ||||| || Sbjct 77 AAGGAAGGCATCCCTCCCGATCAGCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGAC 136 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | || ||| || ||||| || || || || || Sbjct 137 GGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCCAC 177 >seq65762 Length=1559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || ||||||| |||| |||||| | | Sbjct 379 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 320 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 319 GACACCATCGAGAACGTGAAGCAGAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 260 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | || ||| || ||| Sbjct 259 CAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACAAC 200 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || || || |||| Sbjct 199 ATCCAGAAGGAGTCCACCCTTCA 177 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | || || || | || ||| |||| |||||| | Sbjct 836 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTC 777 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || || || ||||| ||||| |||||||| |||||||| || Sbjct 776 GGACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCA 717 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | || ||||| ||||| || | | | | | || ||| || || Sbjct 716 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 657 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 656 CATCCAGAAGGAGTCCAC 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429582525296145