Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq37491 98.7 8e-16 seq64025 87.8 2e-12 seq55626 82.4 6e-11 >seq37491 Length=1671 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || || || ||||| || || ||||||||| |||| ||||||||| Sbjct 603 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCCAGC 544 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | || || || || ||||| ||| || || || ||| |||| |||||| Sbjct 543 GACAC-GATCGAGAACGTGAAGCAAAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCA 485 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | || || | |||||||| || | || || | | ||| ||||||| || || Sbjct 484 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCCGACTACAA 425 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||| || || ||||| || Sbjct 424 CATCCAGAAGGAGTCCAC 407 >seq64025 Length=5555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || ||||||||| || || || || || || || || ||||||||| |||| ||||| Sbjct 1715 AACAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATTACCCTCGAGGTCGAGTC 1656 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 ||||||||| | | | || || ||||| || || || || ||| ||||| ||| Sbjct 1655 CAGCGACACCATCGAGAACGTGAAGCAAAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 1596 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| | || || | |||||||| || | || || | | || | ||||| || Sbjct 1595 TCAGCAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGTACACTCGCCGACTA 1536 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 ||||| || || ||||| || Sbjct 1535 CAACATCCAGAAGGAGTCCAC 1515 >seq55626 Length=4059 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || |||||| || || || || || ||||| || || ||||| ||| |||| ||||| Sbjct 3765 AACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTC 3824 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 ||||||||| | | || || || || ||||| || || || || ||| | || | Sbjct 3825 CAGCGACAC-GATCGAGAACGTCAAGCAAAAGATCCAGGACAAGGAGGGCATTCCTCCCG 3883 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 ||||||| | || || | ||| ||||| || | || || | | ||| ||||||| | Sbjct 3884 ATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACT 3943 Query 115461 ATAACATTCAAAAAGAGTCTAC 115482 | ||||| || || ||||| || Sbjct 3944 ACAACATCCAGAAGGAGTCCAC 3965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424994300639080