Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15025 123 2e-23 seq6684 123 2e-23 seq6425 122 6e-23 seq21318 105 4e-18 seq64861 95.1 8e-15 seq61750 95.1 8e-15 seq64025 91.5 1e-13 seq37491 87.8 1e-12 seq14397 86.0 4e-12 seq33763 82.4 5e-11 >seq15025 Length=127 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 35 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTTGGTGGTAGATAGGGACAGTGGGAATCTCGT 94 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 95 TAATCCATTCATGCGCGTCACTAATTAGATGAC 127 >seq6684 Length=105 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 13 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 72 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 73 TAATCCATTCATGCGCGTCACTAATTAGATGAC 105 >seq6425 Length=127 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| | |||||||| Sbjct 15 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTTGGAATCTCGT 74 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 75 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 109 >seq21318 Length=108 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 26 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 85 Query 20007 GGT---AATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 86 GCTGACAATATTTAGCCTT 104 >seq64861 Length=3609 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || ||||| | || ||| | || | || || ||| |||||| || || ||||| || Sbjct 671 TTGCCACCGCGCAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 730 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 | || ||| |||| || | || || || || || || || || || ||||| | | Sbjct 731 GCCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGATCCGGG 790 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTAT--CTCCACTTT 38265 |||| ||| || |||||| || ||||||||||| |||| || |||| ||| || | Sbjct 791 GGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTCGAC--T 848 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || | ||||| || || || |||| || || ||||| ||||||||| Sbjct 849 CGACCTCGAGGGTAATGGTCTTGCCGGTCAGCGTCTTGACGAAGATCTGCATG 901 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || ||||| ||||||||| || ||||| || | | ||| |||| || | || Sbjct 1704 TGGAGAGTCGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGC 1763 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || || || | ||||| |||||| |||||| ||| ||| Sbjct 1764 TTACCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGAATCTTT 1823 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || || || || || | || || || || || ||| Sbjct 1824 TGCTTCACGTTCTCGATGGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTC 1883 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | || || ||||| ||||||||| Sbjct 1884 AGCGTCTTGACGAAGATCTGCATG 1907 >seq61750 Length=9220 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | || ||| |||| || | || || ||||| || Sbjct 3774 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 3833 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||| || || || | ||||| ||| || |||||| || ||||||||||| || Sbjct 3834 GATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 3893 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 || || ||||| | || || || | ||||| || || || |||| ||| || || Sbjct 3894 CTCGATGGTATCGCTGGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGAC 3953 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 3954 GAAGATCTGCAT 3965 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | || | || || ||| |||||| || || ||||| || | Sbjct 3965 TACCGCCACGCAGACGAAGAACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 4024 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| |||| || | || || || || || || || || || || |||| | Sbjct 4025 CCAGGGTACGGCCGTCCTCGAGCTGCTTACCCGCGAAGATGAGACGCTGCTGGTCGGGAG 4084 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| |||||| ||| ||||||||||| |||| || || || | || | Sbjct 4085 GGATGCCTTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATGGTGTCGCTGGACTCGA 4144 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTT 38321 | || | || || || || || || | ||| |||||||| ||||||| ||||| Sbjct 4145 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTT 4198 >seq64025 Length=5555 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||||||| |||||| || || ||||| || | | || |||| || | || Sbjct 825 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGACCGTCCTCGAGCTGC 884 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || || ||||| || ||||| | |||| ||| || |||||| || || Sbjct 885 TTGCCGGCGAAGATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC 944 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||||||||||| || || || || ||||| || | || || || || || ||| Sbjct 945 TGCTTCACATTCTCGATCGTGTCCGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTC 1004 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| |||||||| Sbjct 1005 AGCGTCTTGACGAAGATCTGCAT 1027 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| |||||| || || ||||| || | | ||| |||| || | || Sbjct 1509 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCGTCCTCGAGCTGC 1568 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || || || ||||| | ||||| ||| || |||||| || ||| Sbjct 1569 TTGCCCGCGAAGATGAGACGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTT 1628 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || | || || || | ||||| || || || ||| Sbjct 1629 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTC 1688 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| |||||||| || ||||| Sbjct 1689 AGGGTCTTCACGAAGATTTGCAT 1711 >seq37491 Length=1671 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | | ||| | ||| | || || ||| |||||| || || ||||| || | Sbjct 375 TACCGCCACGAAGACGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 434 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || |||| || | || || || || || || || || || ||||| | | Sbjct 435 CCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGATCAGGAG 494 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| ||| ||||||||||| |||| || || || | || | Sbjct 495 GGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATCGTGTCGCTGGACTCGA 554 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | ||||| || || || || | ||| |||||||| ||||||||| || Sbjct 555 CCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGGTT 607 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || | || ||| | || | || ||||| ||||| || || ||||| || | Sbjct 147 TACCGCCGCGCAGACGGAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 206 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || ||| |||| || | || || || || || || || || || || |||| | Sbjct 207 CCAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAG 266 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| ||| ||||||||||| |||| || || || || || | Sbjct 267 GGATGCCCTCCTTGTCCTGAATCTTTTGCTTCACGTTCTCGATTGTGTCCGAGCTCTCGA 326 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || |||| || || ||||| |||||||| Sbjct 327 CCTCGAGGGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 375 >seq14397 Length=178 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 38172 TGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATT 38231 || || ||||| || || ||||| || || |||| |||| ||| || |||||| ||| Sbjct 8 TGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATC 67 Query 38232 TTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCC 38291 ||||||||||| |||| || || || || || || || | ||||| || || || Sbjct 68 TTTTGCTTCACGTTCTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTAATGGTCTTGCCG 127 Query 38292 GTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || || ||||| ||||||||| Sbjct 128 GTCAGCGTCTTGACGAAGATCTGCATG 154 >seq33763 Length=823 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| |||||| || || ||||| || | | || |||| || | || Sbjct 206 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTGC 265 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || ||||| || ||||||| |||| ||| || |||||| ||| ||| Sbjct 266 TTACCAGCGAAGATGAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTT 325 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| |||| || || || | || || || | || || || || || || Sbjct 326 TGCTTCACGTTCTCGATGGTGTCGCTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTG 385 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| || ||||| |||||||| Sbjct 386 AGGGTCTTGACGAAGATCTGCAT 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334671820961429