Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lugdunensis_20[genbank_20GCA_5F000826425.1_202015-01- 07] 67,459 sequences; 99,417,109 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq34646 102 1e-16 seq51115 87.8 2e-12 seq45821 87.8 2e-12 seq33978 87.8 2e-12 >seq34646 Length=2231 Score = 102 bits (112), Expect = 1e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||||||||||||||| | || | ||||| |||||||| ||| ||||| Sbjct 2054 ACGCCCCAGATTGGCGACAAGTTCAGTTCGCGCCATGGC-CAAAAGGGTACGGTGGGCAT 2112 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||| | | |||||| || |||||||||||| | Sbjct 2113 CATGTACCGGCAGGAGGACATGCCCTTCAACATCGAAGGCATCACCCCCGACATTATCGT 2172 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||| || ||| || || || |||||||| Sbjct 2173 CAACCCGCACGCCATTCCCTCGCGAATGACCAT 2205 >seq51115 Length=1273 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 306 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 365 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGC--GGTCGATCGCAAG 15518 || | | ||| | |||| || ||| | ||||| | || || ||||||| | Sbjct 366 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCC--AGTGGAGGGCCGATCGCGCG 423 Query 15519 GCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCC 15578 |||||| ||| | || ||||||||||| |||||||| | |||||||| ||| Sbjct 424 ACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCC 483 Query 15579 AATTCCTCAACGAGCG 15594 | |||||||| ||||| Sbjct 484 AGTTCCTCAAGGAGCG 499 >seq45821 Length=1542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 1237 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 1178 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGC--GGTCGATCGCAAG 15518 || | | ||| | |||| || ||| | ||||| | || || ||||||| | Sbjct 1177 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCC--AGTGGAGGGCCGATCGCGCG 1120 Query 15519 GCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCC 15578 |||||| ||| | || ||||||||||| |||||||| | |||||||| ||| Sbjct 1119 ACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCC 1060 Query 15579 AATTCCTCAACGAGCG 15594 | |||||||| ||||| Sbjct 1059 AGTTCCTCAAGGAGCG 1044 >seq33978 Length=1172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || ||||| || ||||| || | || || |||||||| | |||||||| ||| || Sbjct 641 TTCATCGGACCCACCTACTACCAGAGGCTGAAGCACATGGTGGACGACAAGATCCACTCG 700 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGC--GGTCGATCGCAAG 15518 || | | ||| | |||| || ||| | ||||| | || || ||||||| | Sbjct 701 CGCGCTCGCGGCCCGGTGCAGATTCTCACGAGGCAGCC--AGTGGAGGGCCGATCGCGCG 758 Query 15519 GCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCC 15578 |||||| ||| | || ||||||||||| |||||||| | |||||||| ||| Sbjct 759 ACGGTGGTCTCAGGTTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCGGCCC 818 Query 15579 AATTCCTCAACGAGCG 15594 | |||||||| ||||| Sbjct 819 AGTTCCTCAAGGAGCG 834 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 15047 ACGCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCACGTGCGGCAT 15105 |||||| |||| ||||| ||||| | || | | ||| |||||||| ||| ||||| Sbjct 89 ACGCCCCAGATCGGCGATAAGTTCAGTTCGCGCCACGGC-CAAAAGGGTACGGTGGGCAT 147 Query 15106 GATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCAT 15165 || | || ||||| ||||||||||| | | |||||| || |||||||| ||| | Sbjct 148 CATGTACCGGCAGGAGGACATGCCCTTCAACATCGAAGGCATCACCCCCGACATCATCGT 207 Query 15166 CAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||||| || ||| || || || |||||||| Sbjct 208 CAACCCGCACGCCATTCCCTCGCGAATGACCAT 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610876451338400